Alignments for a candidate for ilvD in Cereibacter sphaeroides ATCC 17029

Align Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 (characterized)
to candidate WP_011339020.1 RSPH17029_RS19210 dihydroxy-acid dehydratase

Query= SwissProt::Q1MIB2
         (612 letters)



>NCBI__GCF_000015985.1:WP_011339020.1
          Length = 612

 Score = 1003 bits (2592), Expect = 0.0
 Identities = 502/610 (82%), Positives = 547/610 (89%), Gaps = 1/610 (0%)

Query: 1   MPVYRSRTTTHGRNMAGARGLWRATGMKDSDFGKPIIAVVNSFTQFVPGHVHLKDLGQLV 60
           MP +RSRT+THGRNMAGARGLWRATG+KDSDFGKPIIA+VNSFTQFVPGHVHLKDLGQLV
Sbjct: 1   MPAFRSRTSTHGRNMAGARGLWRATGVKDSDFGKPIIAIVNSFTQFVPGHVHLKDLGQLV 60

Query: 61  AREIEAAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSRELIADSVEYMVNAHCADAMVCIS 120
           ARE+EAAGG+AKEFNTIAVDDGIAMGHDGMLYSLPSRELIADSVEYMVNAHCADAMVCIS
Sbjct: 61  AREVEAAGGIAKEFNTIAVDDGIAMGHDGMLYSLPSRELIADSVEYMVNAHCADAMVCIS 120

Query: 121 NCDKITPGMLMASLRLNIPTVFVSGGPMEAGKVVM-HGKTHALDLVDAMVAAADDKISDE 179
           NCDKITPGMLMA++RLNIP VFVSGGPMEAGKV +  G+T  +DL+DAMVAAAD+K+SD+
Sbjct: 121 NCDKITPGMLMAAMRLNIPAVFVSGGPMEAGKVTLGDGRTVKMDLIDAMVAAADEKVSDD 180

Query: 180 DVQTIERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSTLATHLDRKRLFVEAGHLI 239
           D+  IE++ACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSTLATH  RK LF+EAG   
Sbjct: 181 DLTRIEQAACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSTLATHAYRKELFLEAGRRA 240

Query: 240 VDLARRYYEQDDVKALPRTIASKQAFENAMTLDIAMGGSTNTVLHILAAAHEGEIDFTMA 299
           V+L RRYYEQ+D   LPR IA+K+AFENAM LDIAMGGSTNTVLHILAAA EG +DFTM 
Sbjct: 241 VELCRRYYEQEDEGVLPRAIATKEAFENAMALDIAMGGSTNTVLHILAAAQEGGVDFTMD 300

Query: 300 DIDALSRRVPCLSKVAPAKSDVHMEDVHRAGGIMSILGELDKGGLLNRDCPTVHAETLGD 359
           DIDALSRRVPCL KVAP K+DVH+EDVHRAGGIMSILGELD+GGLL+RD  TVHA TLG 
Sbjct: 301 DIDALSRRVPCLCKVAPNKADVHIEDVHRAGGIMSILGELDRGGLLHRDTRTVHAPTLGA 360

Query: 360 AIDRWDITRTNSETVRKFYRAAPGGIPTQVAFSQEARWDELDTDRENGVIRSVEHPFSKD 419
           AID+WDI R+N+   R+ + AAPGG+PTQVAFSQ + WD LDTDRE GVIRSV  PFSKD
Sbjct: 361 AIDQWDIGRSNAPEARELFLAAPGGVPTQVAFSQSSTWDTLDTDRETGVIRSVATPFSKD 420

Query: 420 GGLAVLKGNLAIDGCIVKTAGVDESILKFSGPARVFESQDASVKAILANEVKAGDVVVIR 479
           GGLAVLKGNLA DGCIVKTAGVDESIL F+GPA+VFESQDA+V  IL   V+AGDVVVIR
Sbjct: 421 GGLAVLKGNLAPDGCIVKTAGVDESILVFAGPAKVFESQDAAVYGILNGGVQAGDVVVIR 480

Query: 480 YEGPKGGPGMQEMLYPTSYLKSKGLGKACALITDGRFSGGTSGLSIGHASPEAANGGTIG 539
           YEGPKGGPGMQEMLYPTSYLKSKGLGKACALITDGRFSGGTSGLSIGHASPEAA+GG IG
Sbjct: 481 YEGPKGGPGMQEMLYPTSYLKSKGLGKACALITDGRFSGGTSGLSIGHASPEAASGGPIG 540

Query: 540 LVREGDMIDIDIPNRTISLRVSETELAARRAEQDAKGWYPTEVRKRNVTTALKAYAAFAT 599
           LVREGD I+IDIPNRTI+L V E ELAARRAEQDAKGW P   RKR V+ ALK YA FA+
Sbjct: 541 LVREGDRIEIDIPNRTITLAVPEAELAARRAEQDAKGWKPAGPRKRKVSQALKVYAQFAS 600

Query: 600 SADRGAVRDL 609
           SAD+GAVR L
Sbjct: 601 SADKGAVRVL 610


Lambda     K      H
   0.318    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1298
Number of extensions: 35
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 612
Length adjustment: 37
Effective length of query: 575
Effective length of database: 575
Effective search space:   330625
Effective search space used:   330625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)

Align candidate WP_011339020.1 RSPH17029_RS19210 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.29832.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.29832.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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