Alignments for a candidate for rbsK in Cereibacter sphaeroides ATCC 17029

Align Ribokinase (EC 2.7.1.15) (characterized)
to candidate WP_011339573.1 RSPH17029_RS17480 ribokinase

Query= reanno::pseudo1_N1B4:Pf1N1B4_6031
         (305 letters)



>NCBI__GCF_000015985.1:WP_011339573.1
          Length = 315

 Score =  223 bits (567), Expect = 6e-63
 Identities = 136/302 (45%), Positives = 174/302 (57%), Gaps = 1/302 (0%)

Query: 2   PAKVVVIGSLNMDLVTRAPRLPRGGETLIGKSFATVSGGKGANQAVAAARLGAQVSMVGC 61
           P ++ V+GS  +DLVT   R+P  GET+    F    GGKGANQAVAAA+LG+ VSMV  
Sbjct: 6   PGRIAVVGSNMVDLVTYITRMPAPGETIEAPDFEIGCGGKGANQAVAAAKLGSAVSMVTK 65

Query: 62  VGNDAYGEALRGALLAEQIDCQAVSTVED-SSGVALIVVDDNSQNAIVIVAGANGALTPE 120
           VG+D +GE  R  L    ID + V TV   SSGVA I V+ + +N+I+IV GAN  L P 
Sbjct: 66  VGDDIFGENTRRNLAQHGIDIRHVETVAGKSSGVAPIFVEASGENSILIVKGANADLLPA 125

Query: 121 VIDRFDAVLQAADVIICQLEVPDATVGHALKRGRELGKTVILNPAPASRPLPVDWYAAID 180
            +D  +  L+AAD+I+ Q+EVP  TV H ++R  E G   ILNPAPA+  L VD    + 
Sbjct: 126 DVDTAEETLRAADLILMQMEVPRETVIHTVRRAAEWGVRTILNPAPAAADLNVDDLRDLS 185

Query: 181 YLIPNESEASVLSGLPVDSLSTAETAATRLIAMGAGKVIITLGSQGSLFADGQRFEHFPA 240
           +L+PNESE +++SGLP  S      AA  LI  G G VI+TLG +G+             
Sbjct: 186 FLVPNESELALISGLPTGSEEEIAAAALSLIERGIGTVIVTLGGRGARLVTRAGVVPIAP 245

Query: 241 AKVKAVDTTAAGDTFVGGFAAALAAGKGEADAIRFGQVAAALSVTRAGAQPSIPTLSDVQ 300
            +V  VDTT AGD F+G FA  LAA      A+      AA SVT  G Q S  T    +
Sbjct: 246 VRVTPVDTTGAGDAFIGAFAHFLAATGEVEGALAHAARYAAHSVTGRGTQKSYATPEAFE 305

Query: 301 AF 302
           AF
Sbjct: 306 AF 307


Lambda     K      H
   0.316    0.132    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 279
Number of extensions: 11
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 315
Length adjustment: 27
Effective length of query: 278
Effective length of database: 288
Effective search space:    80064
Effective search space used:    80064
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)

Align candidate WP_011339573.1 RSPH17029_RS17480 (ribokinase)
to HMM TIGR02152 (rbsK: ribokinase (EC 2.7.1.15))

Software error:

../bin/blast/fastacmd -i /tmp/list.704.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.704.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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