Alignments for a candidate for leuC in Rhodospirillum rubrum ATCC 11170

Align 3-isopropylmalate dehydratase large subunit; EC 4.2.1.33 (characterized)
to candidate WP_011388944.1 RRU_RS06225 3-isopropylmalate dehydratase large subunit

Query= CharProtDB::CH_024771
         (466 letters)



>NCBI__GCF_000013085.1:WP_011388944.1
          Length = 472

 Score =  635 bits (1639), Expect = 0.0
 Identities = 310/463 (66%), Positives = 374/463 (80%)

Query: 3   KTLYEKLFDAHVVYEAENETPLLYIDRHLVHEVTSPQAFDGLRAHGRPVRQPGKTFATMD 62
           KTL+ K++ +H+V   ++ T L+YIDRHLVHEVTSPQAF+GLR  GR VR+P +T A  D
Sbjct: 5   KTLFNKIWQSHLVDVQDDGTCLIYIDRHLVHEVTSPQAFEGLRMTGRKVRRPEQTLAVAD 64

Query: 63  HNVSTQTKDINACGEMARIQMQELIKNCKEFGVELYDLNHPYQGIVHVMGPEQGVTLPGM 122
           HNV T  +      E +RIQ++ L  N  EFGV   +++   QGIVH++GPEQG TLPG 
Sbjct: 65  HNVPTTDRSKGIADEESRIQVEALGSNTAEFGVPYLEMDDIRQGIVHIVGPEQGFTLPGA 124

Query: 123 TIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQGRAKTMKIEVQGKAAPGITAKD 182
           TIVCGDSHT+THGAFGALAFGIGTSEVEHVLATQTL Q  AK M + + G   PG++AKD
Sbjct: 125 TIVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLLQKPAKDMLVRIDGALRPGVSAKD 184

Query: 183 IVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMTLCNMAIEMGAKAGLVAPDETTFNY 242
           IVLA+IG+ G+AGGTGHV+EF GEAIR LSMEGRMT+CNM IE GA+AGL+APDE TF Y
Sbjct: 185 IVLAVIGRIGTAGGTGHVIEFAGEAIRGLSMEGRMTVCNMTIEGGARAGLIAPDEVTFEY 244

Query: 243 VKGRLHAPKGKDFDDAVAYWKTLQTDEGATFDTVVTLQAEEISPQVTWGTNPGQVISVND 302
           +KGR  APKG  ++ A++YWKTL+TDEGA +DTV+ + A  I PQVTWGT+P  V++++ 
Sbjct: 245 LKGRPFAPKGAAWEAAISYWKTLKTDEGAVYDTVIEMDAGAIEPQVTWGTSPENVVALSG 304

Query: 303 NIPDPASFADPVERASAEKALAYMGLKPGIPLTEVAIDKVFIGSCTNSRIEDLRAAAEIA 362
            +PDPA+ ADP  RA+ E+ALAYM LKPG+P+TEVAIDKVFIGSCTN RIEDLRAAA IA
Sbjct: 305 RVPDPAAEADPGRRAAIERALAYMDLKPGMPMTEVAIDKVFIGSCTNGRIEDLRAAAAIA 364

Query: 363 KGRKVAPGVQALVVPGSGPVKAQAEAEGLDKIFIEAGFEWRLPGCSMCLAMNNDRLNPGE 422
           KGRKVA  V A+VVPGSG VK QAE+EGLD+IF+EAGFEWR PGCSMCLAMN D+L PGE
Sbjct: 365 KGRKVAATVNAIVVPGSGLVKEQAESEGLDQIFLEAGFEWREPGCSMCLAMNADKLAPGE 424

Query: 423 RCASTSNRNFEGRQGRGGRTHLVSPAMAAAAAVTGHFADIRNI 465
           RCASTSNRNFEGRQG+GGRTHLVSPA+A A+A+TG   D +++
Sbjct: 425 RCASTSNRNFEGRQGKGGRTHLVSPAVAVASAITGKLTDAQSL 467


Lambda     K      H
   0.317    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 817
Number of extensions: 37
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 472
Length adjustment: 33
Effective length of query: 433
Effective length of database: 439
Effective search space:   190087
Effective search space used:   190087
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_011388944.1 RRU_RS06225 (3-isopropylmalate dehydratase large subunit)
to HMM TIGR00170 (leuC: 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.9776.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9776.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.