Alignments for a candidate for argC in Rhodospirillum rubrum ATCC 11170

Align Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic; AGPR; N-acetyl-glutamate semialdehyde dehydrogenase; NAGSA dehydrogenase; EC 1.2.1.38 (characterized)
to candidate WP_011390174.1 RRU_RS12535 N-acetyl-gamma-glutamyl-phosphate reductase

Query= SwissProt::Q93Z70
         (401 letters)



>NCBI__GCF_000013085.1:WP_011390174.1
          Length = 352

 Score =  402 bits (1032), Expect = e-116
 Identities = 206/348 (59%), Positives = 249/348 (71%), Gaps = 5/348 (1%)

Query: 59  IRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK 118
           + + +LGASGYTGAE+VRLLA HP   +  +TA+RKAGQ+  SVFPHL    LP L +++
Sbjct: 5   VNVAILGASGYTGAELVRLLARHPRVTLAALTANRKAGQAFASVFPHLGGLDLPVLSTIE 64

Query: 119 DADFSTVDAVFCCLPHGTTQEIIKELPTA-----LKIVDLSADFRLRNIAEYEEWYGQPH 173
             D+S +D VFC LPHGTTQ II +L        L+I DLSADFRL +   Y+ WYG  H
Sbjct: 65  AVDWSAIDFVFCALPHGTTQTIIGDLLNGPHGGRLRIADLSADFRLADPMVYQTWYGHAH 124

Query: 174 KAVELQKEVVYGLTEILREDIKKARLVANPGCYPTTIQLPLVPLLKANLIKHENIIIDAK 233
           +AVELQKE VYGLTEI R  I  ARLVA PGCYPT+ QLPL+PLL+A LI  + IIIDAK
Sbjct: 125 EAVELQKEAVYGLTEINRAAIATARLVAVPGCYPTSAQLPLIPLLRAGLIDPDAIIIDAK 184

Query: 234 SGVSGAGRGAKEANLYSEIAEGISSYGVTRHRHVPEIEQGLSDVAQSKVTVSFTPHLMPM 293
           SG SGAGR AKE +L+ E++EGI +YGV  HRH PEIEQGLS      V V+FTPHLMPM
Sbjct: 185 SGASGAGRDAKEGSLHCEVSEGIHAYGVGTHRHGPEIEQGLSLAVGRPVAVTFTPHLMPM 244

Query: 294 IRGMQSTIYVEMAPGVRTEDLHQQLKTSYEDEEFVKVLDEGVVPRTHNVRGSNYCHMSVF 353
            RG+ STIY+    G     L Q L  +Y DE FV+V+ EGV P T +VRGSN+  + V 
Sbjct: 245 NRGILSTIYLRATAGNDATTLRQALSAAYADEAFVRVVPEGVSPHTRHVRGSNFVLIGVH 304

Query: 354 PDRIPGRAIIISVIDNLVKGASGQALQNLNIMLGYPETTGLLHQPLFP 401
            DR+PGR I+  V DNLVKGASGQA+Q++N+MLG+PET GL  QPLFP
Sbjct: 305 ADRVPGRVIVTCVEDNLVKGASGQAIQDMNVMLGFPETLGLDQQPLFP 352


Lambda     K      H
   0.318    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 440
Number of extensions: 15
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 352
Length adjustment: 30
Effective length of query: 371
Effective length of database: 322
Effective search space:   119462
Effective search space used:   119462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_011390174.1 RRU_RS12535 (N-acetyl-gamma-glutamyl-phosphate reductase)
to HMM TIGR01850 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))

Software error:

../bin/blast/fastacmd -i /tmp/list.19194.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19194.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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