Alignments for a candidate for argI in Rhizobium etli CFN 42

Align ornithine carbamoyltransferase (EC 2.1.3.3) (characterized)
to candidate WP_011423890.1 RHE_RS02615 ornithine carbamoyltransferase

Query= BRENDA::Q98BB6
         (303 letters)



>NCBI__GCF_000092045.1:WP_011423890.1
          Length = 304

 Score =  466 bits (1198), Expect = e-136
 Identities = 223/303 (73%), Positives = 256/303 (84%)

Query: 1   MSVRHFTDLSTVSEGDLRFMLDDAVVRKARLKAGERTRPLEGKVLAMIFDKPSTRTRVSF 60
           M+ +HF DLS V+  DLR +++DA+ RK   KAG+  +PL GK+LAMIF+KPSTRTRVSF
Sbjct: 1   MAPKHFLDLSAVTSADLRTIMNDALSRKQAFKAGKGDKPLAGKMLAMIFEKPSTRTRVSF 60

Query: 61  DVGMRQLGGETIMLTGTEMQLGRSETIADTAKVLSRYVDAIMIRTTSHDRLLELTENATV 120
           DVGMRQLGGET+ L+GTEMQLGR+ETI DTAKVLSRYVDAIMIRTT H RLLEL E+ATV
Sbjct: 61  DVGMRQLGGETLFLSGTEMQLGRAETIGDTAKVLSRYVDAIMIRTTEHSRLLELAEHATV 120

Query: 121 PVINGLTDDTHPCQLMADIMTFEEHRGPVAGKTIAWTGDGNNVLHSLLEASARFRFNLNV 180
           PVIN LTDDTHPCQ+MADIMTFEEHRGP+ GKTIAWTGDGNNVLHSL+E +ARF + +N+
Sbjct: 121 PVINALTDDTHPCQIMADIMTFEEHRGPIKGKTIAWTGDGNNVLHSLVEGAARFGYRMNM 180

Query: 181 AVPEGSEPAQKHIDWSKAHGGKLHFTRSPEEAVDQADCVVTDCWVSMGQEHRARGHNVFS 240
           AVP GSEP   +++W++  G ++      + AV+  DCVVTD WVSM QEHRARGHNVF 
Sbjct: 181 AVPLGSEPKDHYLNWARNEGAEIMLCHDADRAVEGVDCVVTDTWVSMNQEHRARGHNVFQ 240

Query: 241 PYQVNAKLMAHAKPDALFMHCLPAHRGEEVTDEVIDGPHSVVFDEAENRLHAQKAVLAWC 300
           PYQVNA LMA A  DALFMHCLPAHRGEEVTDEVIDGP SVVFDEAENRLHAQK++LAWC
Sbjct: 241 PYQVNAALMAKAGSDALFMHCLPAHRGEEVTDEVIDGPQSVVFDEAENRLHAQKSILAWC 300

Query: 301 LGA 303
           LGA
Sbjct: 301 LGA 303


Lambda     K      H
   0.320    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 401
Number of extensions: 16
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 304
Length adjustment: 27
Effective length of query: 276
Effective length of database: 277
Effective search space:    76452
Effective search space used:    76452
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_011423890.1 RHE_RS02615 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.27226.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27226.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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