Alignments for a candidate for thrC in Rhizobium etli CFN 42

Align threonine synthase (EC 4.2.3.1) (characterized)
to candidate WP_011424326.1 RHE_RS04950 threonine synthase

Query= BRENDA::Q8YFS0
         (463 letters)



>NCBI__GCF_000092045.1:WP_011424326.1
          Length = 474

 Score =  656 bits (1692), Expect = 0.0
 Identities = 318/461 (68%), Positives = 381/461 (82%)

Query: 3   YVSTRGEAPVLGFSDALLAGLARDGGLYLPQEYPQFTAEQIRALRGKSYVEVALAVLTPF 62
           Y+STRGEAP LGF DALL GLARDGGLY+P+E+PQF+ ++IRALRGK+Y E+A  +L+PF
Sbjct: 6   YISTRGEAPALGFCDALLTGLARDGGLYVPREWPQFSKKEIRALRGKTYQEIAFTILSPF 65

Query: 63  TGGEIPAADFERMVREAYGTFRHDAVCPLVQTDANEFVLELFHGPTLAFKDVAMQLLARM 122
           T GEIPAA F  M+ EAYGTFRH A+ PLVQT  N FV+ELFHG TLAFKDVAMQLLAR+
Sbjct: 66  TNGEIPAATFRAMIDEAYGTFRHPAIAPLVQTGPNSFVMELFHGTTLAFKDVAMQLLARL 125

Query: 123 MDYVLAQRGERATIVGATSGDTGGAAIEAFGGRDNTDIFILFPNGRVSPVQQRQMTSSGF 182
           MDY L +RGERATIVGATSGDTGGAAI+AF GR+ TDIFILFP+G+VSPVQQRQMT+S  
Sbjct: 126 MDYALEKRGERATIVGATSGDTGGAAIDAFAGRERTDIFILFPHGKVSPVQQRQMTTSTA 185

Query: 183 SNVHALSIEGNFDDCQNLVKGMFNDLEFCDALSLSGVNSINWARIMPQVVYYFTAALSLG 242
           +NVHAL++EGNFDDCQNLVK MFND  F D +SLSGVNSINWARIM Q+VYYFT A++LG
Sbjct: 186 ANVHALAVEGNFDDCQNLVKAMFNDAAFRDKVSLSGVNSINWARIMAQIVYYFTTAVALG 245

Query: 243 APDRAVSFTVPTGNFGDIFAGYVAKRMGLPIEQLIIATNDNDILSRTLESGAYEMRGVAQ 302
            PDR +SFTVPTGNFGDIFAGY AKRMGLPI++L+IATN+NDIL+RTL++G Y+M+ V  
Sbjct: 246 GPDRKISFTVPTGNFGDIFAGYCAKRMGLPIDRLVIATNENDILTRTLKTGRYDMKAVKA 305

Query: 303 TTSPSMDIQISSNFERLLFEAHGRDAAAVRGLMQGLKQSGGFTISEKPLSAIRSEFSAGR 362
           T+SPSMDIQISSNFERLLFEA+GRDA+ VR  M+ LKQSGGF I+ + L  IR +F AGR
Sbjct: 306 TSSPSMDIQISSNFERLLFEAYGRDASKVRAAMESLKQSGGFEIAPEALKVIRRDFRAGR 365

Query: 363 STVDETAATIESVLSKDGYLLDPHSAIGVKVAREKASGTAPMVVLATAHPAKFPDAVKAA 422
           ++  + A TI    ++ GYLLDPHSAIGV VA ++     PMV L+TAHPAKFP AVK+A
Sbjct: 366 ASEKQVAETIRKTHAETGYLLDPHSAIGVFVAAKQEKPNTPMVTLSTAHPAKFPAAVKSA 425

Query: 423 CGVEPQLPAWLCDLMQRKESFTVLHNELKIVEEYVRHHSRA 463
           CG++P LP WL  LM R+E F ++  ELK VE ++  H+R+
Sbjct: 426 CGIDPALPTWLAGLMHREERFQIIKPELKAVETFIGQHARS 466


Lambda     K      H
   0.320    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 643
Number of extensions: 21
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 474
Length adjustment: 33
Effective length of query: 430
Effective length of database: 441
Effective search space:   189630
Effective search space used:   189630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate WP_011424326.1 RHE_RS04950 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.32121.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.32121.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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