Alignments for a candidate for argG in Rhizobium etli CFN 42

Align Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 (characterized)
to candidate WP_011427116.1 RHE_RS20070 argininosuccinate synthase

Query= SwissProt::P59846
         (400 letters)



>NCBI__GCF_000092045.1:WP_011427116.1
          Length = 407

 Score =  491 bits (1265), Expect = e-143
 Identities = 248/390 (63%), Positives = 298/390 (76%), Gaps = 3/390 (0%)

Query: 2   KIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQGEEVEEAREKALRTGASKAIALDL 61
           K+VLAYSGGLDTSIILKWL+    AEV+ FTAD+GQGEE+E AR+KA   G  +    D+
Sbjct: 9   KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADLGQGEELEPARKKAEMLGIKEIYIEDV 68

Query: 62  KEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGND 121
           +EEFVRDFVFPM RA AVYEG YLLGTSIARPLI+KHL+ IA + GA+AIAHGATGKGND
Sbjct: 69  REEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIDIARKTGADAIAHGATGKGND 128

Query: 122 QVRFELTAYALKPDIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQ--EKPYSMDANLL 179
           QVRFEL+AYAL PDIK+IAPWR+W+F+ R E++A+AE H IPV   +  E P+S+DANLL
Sbjct: 129 QVRFELSAYALNPDIKIIAPWRDWAFKSRTELLAFAEQHQIPVAKDKKGEAPFSVDANLL 188

Query: 180 HISYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPAALL 239
           H S EG VLEDP  E P+ +   T  PE APD    ++V F +GD V++NG  +SPA LL
Sbjct: 189 HSSSEGKVLEDPAQEAPEYVHMRTISPEAAPDKATVIKVGFRKGDAVSINGVEMSPATLL 248

Query: 240 QRLNEIGGRHGVGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLDREVLHQRD 299
             LN  G  +G+GR+D+VENRFVGMKSRGVYETPGGTIL  A RA+ES+TLDR   H +D
Sbjct: 249 ATLNTYGRDNGIGRLDLVENRFVGMKSRGVYETPGGTILLSAHRAIESITLDRGAAHLKD 308

Query: 300 MLSPKYAELVYYGFWYAPEREALQAYFDHVARSVTGVARLKLYKGNVYVVGRKAPKSLYR 359
            + P+YAEL+YYGFW++PERE LQA  D     V G   LKLYKGNV V+GR++ KSLY 
Sbjct: 309 EIMPRYAELIYYGFWFSPEREMLQALIDKSQEYVEGEVTLKLYKGNVMVIGRESEKSLYS 368

Query: 360 QDLVSF-DEAGGYDQKDAEGFIKIQALRLR 388
             LV+F D+ G YDQKDA GFIK+ ALRLR
Sbjct: 369 DKLVTFEDDQGAYDQKDAAGFIKLNALRLR 398


Lambda     K      H
   0.319    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 502
Number of extensions: 15
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 407
Length adjustment: 31
Effective length of query: 369
Effective length of database: 376
Effective search space:   138744
Effective search space used:   138744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_011427116.1 RHE_RS20070 (argininosuccinate synthase)
to HMM TIGR00032 (argG: argininosuccinate synthase (EC 6.3.4.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.4299.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4299.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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