Alignments for a candidate for asd in Novosphingobium aromaticivorans DSM 12444

Align Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11 (characterized)
to candidate WP_011445068.1 SARO_RS07070 aspartate-semialdehyde dehydrogenase

Query= SwissProt::P23247
         (337 letters)



>NCBI__GCF_000013325.1:WP_011445068.1
          Length = 341

 Score =  323 bits (827), Expect = 5e-93
 Identities = 176/335 (52%), Positives = 228/335 (68%), Gaps = 7/335 (2%)

Query: 5   FNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFN--GKTVRVQNVEEF 62
           + V + GATG VG  ML +L EREFP DE+  +AS RS+G    F   G+ ++VQNVE F
Sbjct: 3   YRVVVVGATGNVGREMLNILAEREFPCDEIAAVASSRSQGTEIEFGETGRKLKVQNVENF 62

Query: 63  DWSQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFR 122
           D++   IALF+AG   +   AP AA  G VVIDN+S +R D D+PL+VPEVNP+AI  + 
Sbjct: 63  DFTGWDIALFAAGSGPTQIHAPRAASQGCVVIDNSSLYRMDPDVPLIVPEVNPDAIDGYT 122

Query: 123 NRNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNG 182
            +NIIANPNCST QM+VALKP++DA  I+R+ V+TYQSVSGAGK G+DEL  Q+  +  G
Sbjct: 123 KKNIIANPNCSTAQMVVALKPLHDAAKIKRVVVSTYQSVSGAGKEGMDELFEQSRAIFVG 182

Query: 183 YPAETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVPVF 242
            P E   F++QIAFN IP ID F+D+G TKEE KMV ET+KI  DP + V  TCVRVPVF
Sbjct: 183 DPVEPKKFTKQIAFNVIPHIDVFLDDGSTKEEWKMVAETKKIL-DPKVKVTATCVRVPVF 241

Query: 243 YGHAEAVHVETRAPIDAEQVMDMLEQTDGIELF---RGADFPTQVRDAGGKDHVLVGRVR 299
            GH+EA+++E    I AE+  ++L +  G+ L        + T V +  G     V RVR
Sbjct: 242 IGHSEALNIEFENEISAEEAQNILREAPGVMLVDKRENGGYVTPV-ECVGDFATFVSRVR 300

Query: 300 NDISHHSGINLWVVADNVRKGAATNAVQIAELLVR 334
            D +  +G+N+W V+DN+RKGAA NAVQIAELL R
Sbjct: 301 EDSTVDNGLNIWCVSDNLRKGAALNAVQIAELLGR 335


Lambda     K      H
   0.319    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 346
Number of extensions: 15
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 341
Length adjustment: 28
Effective length of query: 309
Effective length of database: 313
Effective search space:    96717
Effective search space used:    96717
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_011445068.1 SARO_RS07070 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.29293.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.29293.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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