Alignments for a candidate for carA in Novosphingobium aromaticivorans DSM 12444

Align Carbamoyl-phosphate synthase small chain; Carbamoyl-phosphate synthetase glutamine chain; EC 6.3.5.5 (characterized)
to candidate WP_011445875.1 SARO_RS11225 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit

Query= SwissProt::P0A6F1
         (382 letters)



>NCBI__GCF_000013325.1:WP_011445875.1
          Length = 391

 Score =  348 bits (894), Expect = e-100
 Identities = 195/375 (52%), Positives = 241/375 (64%), Gaps = 10/375 (2%)

Query: 4   SALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNV 63
           + +LVL DG+   GR  GA G+AVGEV FNT+MTGYQE++TDPSY+ Q+VT T+PHIGNV
Sbjct: 16  TGVLVLADGSVAWGRGFGAAGAAVGEVCFNTAMTGYQEVMTDPSYAGQVVTFTFPHIGNV 75

Query: 64  GTNDADEESSQVH-AQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLL 122
           GTN  D ES     A G V+R+     +NFR       ++++   + I+ +DTR LTR +
Sbjct: 76  GTNPDDMESHDTPGAVGCVVREDVTAPANFRAAGTFQQWMEQQGKIGISGLDTRALTRRI 135

Query: 123 REKGAQNGCIIAGDNP---DAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTG 179
           R  GA N  +IA D     D    +E+AR++PGL GMDLA+ VT     +W    W L  
Sbjct: 136 RLSGAPNA-VIAHDPKGQFDIPALIERARSWPGLEGMDLARVVTRDGQEAWEGSVWHLGE 194

Query: 180 GLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLS 239
           G    K +     HVVA DFGAK NI R LV  G  +TIVPA+TS E +L + P G+FLS
Sbjct: 195 GF--TKPQGTGRPHVVAMDFGAKDNIFRNLVKAGADVTIVPAETSLETILSLKPAGVFLS 252

Query: 240 NGPGDPAPCD-YAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVK 298
           NGPGDPA    YA+  IQK LE D+PVFGICLGHQ+LALA+GA+T KM  GH G NHPVK
Sbjct: 253 NGPGDPAATGAYAVPVIQKLLEMDMPVFGICLGHQMLALAAGARTTKMHQGHRGANHPVK 312

Query: 299 DVEKNVVMITAQNHGFAVDEA--TLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEA 356
            +E  VV IT+ NHGFAVD A   L   +  TH SLFDG+  GI    K AF  Q HPEA
Sbjct: 313 RIEDGVVEITSMNHGFAVDNAPGALGDKVIETHVSLFDGSNCGIAVKGKKAFGVQYHPEA 372

Query: 357 SPGPHDAAPLFDHFI 371
           SPGP D+  LF+ F+
Sbjct: 373 SPGPQDSFYLFEKFV 387


Lambda     K      H
   0.318    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 477
Number of extensions: 23
Number of successful extensions: 6
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 391
Length adjustment: 30
Effective length of query: 352
Effective length of database: 361
Effective search space:   127072
Effective search space used:   127072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_011445875.1 SARO_RS11225 (glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit)
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.26999.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26999.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.