Alignments for a candidate for gatA in Novosphingobium aromaticivorans DSM 12444

Align Glutamyl-tRNA(Gln) amidotransferase subunit A; Glu-ADT subunit A; EC 6.3.5.7 (characterized)
to candidate WP_011446472.1 SARO_RS14365 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA

Query= SwissProt::O06491
         (485 letters)



>NCBI__GCF_000013325.1:WP_011446472.1
          Length = 494

 Score =  440 bits (1131), Expect = e-128
 Identities = 231/480 (48%), Positives = 321/480 (66%), Gaps = 7/480 (1%)

Query: 2   SLFDHKITELKQLIHKKEIKISDLVDESYKRIQAVDDKVQAFLALDEERARAYAKELDEA 61
           +L D  I  ++  + + +   +++       ++A    + AF+    E A   A ++D  
Sbjct: 3   NLTDLGIAAIRDGVARGDFTATEVATAFNAAVEAAQPALNAFIVTTPEEALEAAGKVDAD 62

Query: 62  VDGRSEHGLLFGMPIGVKDNIVTKGLRTTCSSKILENFDPIYDATVVQRLQDAEAVTIGK 121
                  G + G+PIG+KD   T+G +TT +SKILE F P Y++TV Q+L DA A  +GK
Sbjct: 63  RTAGRPLGKMAGVPIGMKDLFATRGTQTTAASKILEGFMPEYESTVSQKLWDAGAGMLGK 122

Query: 122 LNMDEFAMGSSTENSAYKLTKNPWNL--DTVP---GGSSGGSAAAVAAGEVPFSLGSDTG 176
           LN+D+FAMGSS E SA+    +PW    DT P   GGSSGGS++AVAA   P + G+DTG
Sbjct: 123 LNLDQFAMGSSNETSAFGNVISPWRRPGDTAPLAPGGSSGGSSSAVAARIAPAATGTDTG 182

Query: 177 GSIRQPASFCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAFLLQAISGVDKM 236
           GSIRQPA+F G+ G+KPTYGR SR+G+VAFASSLDQ GP+ R V D A +L+A++G D  
Sbjct: 183 GSIRQPAAFTGISGIKPTYGRCSRWGIVAFASSLDQAGPMARDVADCAIMLEAMAGFDPK 242

Query: 237 DSTSANVDVPDFLSSLTGDIKGLKIAVPKEYLGEGVGKEARESVLAALKVLEGLGATWEE 296
           DSTS ++ VP++ ++L  D++G K+ +P+EY  +G+  +   S    +  L+  GA   E
Sbjct: 243 DSTSLDMPVPEWTANLDPDMRGKKVGIPREYRLDGMDPDVARSWEDGIAWLKDAGAEIVE 302

Query: 297 VSLPHSKYALATYYLLSSSEASANLARFDGIRYGYR-TDNADNLIDLYKQTRAEGFGNEV 355
           +SLPH+KYAL TYY+++ +EAS+NLAR+DG+RYG R       L D+Y  TRA GFG EV
Sbjct: 303 ISLPHTKYALPTYYIIAPAEASSNLARYDGVRYGLRDLPEGAGLQDMYAATRAAGFGPEV 362

Query: 356 KRRIMLGTFALSSGYYDAYYKKAQKVRTLIKKDFEDVFEKYDVIVGPTTPTPAFKIGENT 415
           KRRI++GT+ LS+G+YDAYY +AQKVRTLI  DF + F + DVI+ PT P+ AF +GE +
Sbjct: 363 KRRILIGTYVLSAGFYDAYYTQAQKVRTLISHDFTNAFREVDVILAPTAPSSAFALGEKS 422

Query: 416 KDPLTMYANDILTIPVNLAGVPGISVPCGL-ADGLPLGLQIIGKHFDESTVYRVAHAFEQ 474
            DPL MY ND+ ++P +LAG+P +SVP GL  +GLPLGLQ+IG+ FDE  V     A EQ
Sbjct: 423 ADPLEMYLNDVFSVPASLAGLPAMSVPAGLDRNGLPLGLQVIGRAFDEQGVLNAGLALEQ 482


Lambda     K      H
   0.315    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 613
Number of extensions: 34
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 494
Length adjustment: 34
Effective length of query: 451
Effective length of database: 460
Effective search space:   207460
Effective search space used:   207460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)

Align candidate WP_011446472.1 SARO_RS14365 (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA)
to HMM TIGR00132 (gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit (EC 6.3.5.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.8875.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8875.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.