Alignments for a candidate for asp-kinase in Frankia alni ACN14a

Align aspartate kinase (EC 2.7.2.4) (characterized)
to candidate WP_011601854.1 FRAAL_RS02615 aspartate kinase

Query= BRENDA::P9WPX3
         (421 letters)



>NCBI__GCF_000058485.1:WP_011601854.1
          Length = 422

 Score =  571 bits (1472), Expect = e-167
 Identities = 296/422 (70%), Positives = 350/422 (82%), Gaps = 1/422 (0%)

Query: 1   MALVVQKYGGSSVADAERIRRVAERIVATKKQGNDVVVVVSAMGDTTDDLLDLAQQVCPA 60
           MAL+V K+GGSSVADA+RI+RVAER+V  ++ GNDVVVVVSAMGDTTD+LLDLA+QV P 
Sbjct: 1   MALLVAKFGGSSVADADRIKRVAERVVEARRDGNDVVVVVSAMGDTTDELLDLAEQVSPL 60

Query: 61  PPPRELDMLLTAGERISNALVAMAIESLGAHARSFTGSQAGVITTGTHGNAKIIDVTPGR 120
           PP RELDMLLTAGERIS AL+AMAI +LGA ARSFTGSQAGVIT   HG A+IIDVTPGR
Sbjct: 61  PPARELDMLLTAGERISMALLAMAITTLGAEARSFTGSQAGVITDSVHGKARIIDVTPGR 120

Query: 121 LQTALEEGRVVLVAGFQGVSQDTKDVTTLGRGGSDTTAVAMAAALGADVCEIYTDVDGIF 180
           ++ AL+EG + +VAGFQGVSQDTKD+TTLGRGGSDTTAVA+AAAL AD CEIYTDVDG+F
Sbjct: 121 IRAALDEGAIAIVAGFQGVSQDTKDITTLGRGGSDTTAVALAAALHADACEIYTDVDGVF 180

Query: 181 SADPRIVRNARKLDTVTFEEMLEMAACGAKVLMLRCVEYARRHNIPVHVRSSYSDRPGTV 240
           SADPRIV +AR++DT+++EEMLEMAACGAKVLMLRCVEYARR+++PVHVRSS++ +PGT 
Sbjct: 181 SADPRIVPDARRIDTISYEEMLEMAACGAKVLMLRCVEYARRYSVPVHVRSSFNAKPGTW 240

Query: 241 VVGSIKDVPMEDPILTGVAHDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNV 300
           V    +   +E  I+ GVAHD SEAKVT+VG PD PG AA VFRAVADADVN+DM++Q  
Sbjct: 241 VTEIPEAQLVEQAIIRGVAHDVSEAKVTVVGCPDKPGVAAAVFRAVADADVNLDMIVQVG 300

Query: 301 SKVEDGKTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLLYDDHIGKVSLIGAGMRSHPGV 360
           S    G+TDI+FT  +  G  A+  L  ++ EIGF + LYDDHIGK+SLIGAGM+SHPGV
Sbjct: 301 SVAGSGRTDISFTLPKTDGRTALTALAKVQGEIGFERTLYDDHIGKLSLIGAGMKSHPGV 360

Query: 361 TATFCEALAAVGVNIELISTSEIRISVLCRDTELDKAVVALHEAFGLGG-DEEATVYAGT 419
           +A F  ALA  GVN+E+ISTSEIRISV+ RDT+L  AV A+H AF LG  D  A VYAGT
Sbjct: 361 SARFFGALADAGVNVEIISTSEIRISVVVRDTDLPGAVRAVHGAFELGDPDGGAVVYAGT 420

Query: 420 GR 421
           GR
Sbjct: 421 GR 422


Lambda     K      H
   0.318    0.134    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 571
Number of extensions: 19
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 422
Length adjustment: 32
Effective length of query: 389
Effective length of database: 390
Effective search space:   151710
Effective search space used:   151710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_011601854.1 FRAAL_RS02615 (aspartate kinase)
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.22489.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22489.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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