Alignments for a candidate for carA in Frankia alni ACN14a

Align Carbamoyl-phosphate synthase small chain; Carbamoyl-phosphate synthetase glutamine chain; EC 6.3.5.5 (characterized)
to candidate WP_011605800.1 FRAAL_RS20435 carbamoyl phosphate synthase small subunit

Query= SwissProt::P0A6F1
         (382 letters)



>NCBI__GCF_000058485.1:WP_011605800.1
          Length = 383

 Score =  306 bits (784), Expect = 6e-88
 Identities = 175/390 (44%), Positives = 221/390 (56%), Gaps = 33/390 (8%)

Query: 5   ALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVG 64
           A LVLEDG  F GRA GA G   GE VF+T MTGYQE LTDPSY RQ+V +T PH+GN G
Sbjct: 10  AFLVLEDGRTFRGRAYGAVGKTFGEAVFSTGMTGYQETLTDPSYHRQVVVMTAPHVGNTG 69

Query: 65  TNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLRE 124
            ND D ESS++   G V+RD   ++SN+R    L   L    +V I+ IDTR LTR LRE
Sbjct: 70  VNDDDAESSRIWVAGYVVRDPARVSSNWRARRSLDDELAAQGVVGISGIDTRALTRHLRE 129

Query: 125 KGAQ-----NGCIIAGDNP----DAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSW 175
           +G       +G  +AG +     DA   L + R  P + G DL  +VTT + Y       
Sbjct: 130 RGVMRVGIFSGSALAGGSTESPIDAGTLLAEVRRAPEMTGADLVGQVTTTQPYV------ 183

Query: 176 TLTGGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDG 235
                +P         F V A D G K      + +RG  + ++PA  + EDV  + PDG
Sbjct: 184 -----VPAVGTR---RFTVAAIDLGIKGTTSHRMAERGIEVHVLPADATVEDVYTVVPDG 235

Query: 236 IFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNH 295
           +FL NGPGDP   D  +T I+  LE   P+FGICLG+QLL  A G  T K+K+GH G N 
Sbjct: 236 VFLPNGPGDPGTAD--LTVIRAVLERGTPLFGICLGNQLLGRALGFSTYKLKYGHRGINQ 293

Query: 296 PVKDVEKNVVMITAQNHGFAVDEATLPA-------NLRVTHKSLFDGTLQGIHRTDKPAF 348
           PV+D     + ITA NHGFAV EA L A        + V+H  L D  ++G+   D+PAF
Sbjct: 294 PVQDRSTGKIEITAHNHGFAV-EAPLDAVSGTPYGRVEVSHVCLNDDVVEGLRLLDRPAF 352

Query: 349 SFQGHPEASPGPHDAAPLFDHFIELIEQYR 378
           S Q HPEA+ GPHDA  LFD F+ L+E  R
Sbjct: 353 SVQYHPEAAAGPHDAVHLFDRFVSLMESQR 382


Lambda     K      H
   0.318    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 407
Number of extensions: 12
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 383
Length adjustment: 30
Effective length of query: 352
Effective length of database: 353
Effective search space:   124256
Effective search space used:   124256
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_011605800.1 FRAAL_RS20435 (carbamoyl phosphate synthase small subunit)
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.15054.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15054.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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