GapMind for catabolism of small carbon sources

 

Protein WP_011609947.1 in Trichodesmium erythraeum IMS101

Annotation: NCBI__GCF_000014265.1:WP_011609947.1

Length: 561 amino acids

Source: GCF_000014265.1 in NCBI

Candidate for 11 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-arabinose catabolism xacD lo L-arabonate dehydratase (EC 4.2.1.25) (characterized) 38% 97% 353.2 dihydroxyacid dehydratase (EC 4.2.1.9) 68% 767.3
D-galactose catabolism dgoD lo L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 (characterized) 36% 96% 327 dihydroxyacid dehydratase (EC 4.2.1.9) 68% 767.3
lactose catabolism dgoD lo L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 (characterized) 36% 96% 327 dihydroxyacid dehydratase (EC 4.2.1.9) 68% 767.3
D-xylose catabolism xad lo Xylonate dehydratase (EC 4.2.1.82) (characterized) 34% 92% 286.6 dihydroxyacid dehydratase (EC 4.2.1.9) 68% 767.3
D-cellobiose catabolism edd lo Phosphogluconate dehydratase; EC 4.2.1.12 (uncharacterized) 34% 75% 226.1 dihydroxyacid dehydratase (EC 4.2.1.9) 68% 767.3
D-gluconate catabolism edd lo Phosphogluconate dehydratase; EC 4.2.1.12 (uncharacterized) 34% 75% 226.1 dihydroxyacid dehydratase (EC 4.2.1.9) 68% 767.3
D-glucose catabolism edd lo Phosphogluconate dehydratase; EC 4.2.1.12 (uncharacterized) 34% 75% 226.1 dihydroxyacid dehydratase (EC 4.2.1.9) 68% 767.3
lactose catabolism edd lo Phosphogluconate dehydratase; EC 4.2.1.12 (uncharacterized) 34% 75% 226.1 dihydroxyacid dehydratase (EC 4.2.1.9) 68% 767.3
D-maltose catabolism edd lo Phosphogluconate dehydratase; EC 4.2.1.12 (uncharacterized) 34% 75% 226.1 dihydroxyacid dehydratase (EC 4.2.1.9) 68% 767.3
sucrose catabolism edd lo Phosphogluconate dehydratase; EC 4.2.1.12 (uncharacterized) 34% 75% 226.1 dihydroxyacid dehydratase (EC 4.2.1.9) 68% 767.3
trehalose catabolism edd lo Phosphogluconate dehydratase; EC 4.2.1.12 (uncharacterized) 34% 75% 226.1 dihydroxyacid dehydratase (EC 4.2.1.9) 68% 767.3

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000014265.1

New query