GapMind for catabolism of small carbon sources

 

Protein WP_011611554.1 in Trichodesmium erythraeum IMS101

Annotation: NCBI__GCF_000014265.1:WP_011611554.1

Length: 455 amino acids

Source: GCF_000014265.1 in NCBI

Candidate for 32 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-arginine catabolism gabD hi succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) (characterized) 64% 100% 578.2
L-citrulline catabolism gabD hi succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) (characterized) 64% 100% 578.2
putrescine catabolism gabD hi succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) (characterized) 64% 100% 578.2
4-hydroxybenzoate catabolism adh med Aldehyde dehydrogenase; NAD/NADP-dependent aldehyde dehydrogenase; EC 1.2.1.3; EC 1.2.1.4 (characterized) 49% 100% 428.7 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) 64% 578.2
2'-deoxyinosine catabolism adh med Aldehyde dehydrogenase; NAD/NADP-dependent aldehyde dehydrogenase; EC 1.2.1.3; EC 1.2.1.4 (characterized) 49% 100% 428.7 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) 64% 578.2
2-deoxy-D-ribose catabolism adh med Aldehyde dehydrogenase; NAD/NADP-dependent aldehyde dehydrogenase; EC 1.2.1.3; EC 1.2.1.4 (characterized) 49% 100% 428.7 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) 64% 578.2
ethanol catabolism adh med Aldehyde dehydrogenase; NAD/NADP-dependent aldehyde dehydrogenase; EC 1.2.1.3; EC 1.2.1.4 (characterized) 49% 100% 428.7 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) 64% 578.2
L-threonine catabolism adh med Aldehyde dehydrogenase; NAD/NADP-dependent aldehyde dehydrogenase; EC 1.2.1.3; EC 1.2.1.4 (characterized) 49% 100% 428.7 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) 64% 578.2
thymidine catabolism adh med Aldehyde dehydrogenase; NAD/NADP-dependent aldehyde dehydrogenase; EC 1.2.1.3; EC 1.2.1.4 (characterized) 49% 100% 428.7 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) 64% 578.2
L-tryptophan catabolism adh med Aldehyde dehydrogenase; NAD/NADP-dependent aldehyde dehydrogenase; EC 1.2.1.3; EC 1.2.1.4 (characterized) 49% 100% 428.7 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) 64% 578.2
L-arginine catabolism davD lo glutarate-semialdehyde dehydrogenase (EC 1.2.1.20) (characterized) 36% 94% 283.9 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) 64% 578.2
L-citrulline catabolism davD lo glutarate-semialdehyde dehydrogenase (EC 1.2.1.20) (characterized) 36% 94% 283.9 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) 64% 578.2
L-lysine catabolism davD lo glutarate-semialdehyde dehydrogenase (EC 1.2.1.20) (characterized) 36% 94% 283.9 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) 64% 578.2
L-proline catabolism davD lo glutarate-semialdehyde dehydrogenase (EC 1.2.1.20) (characterized) 36% 94% 283.9 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) 64% 578.2
L-arabinose catabolism xacF lo Alpha-ketoglutaric semialdehyde dehydrogenase 1; alphaKGSA dehydrogenase 1; 2,5-dioxovalerate dehydrogenase 1; 2-oxoglutarate semialdehyde dehydrogenase 1; KGSADH-I; Succinate-semialdehyde dehydrogenase [NAD(+)]; SSDH; EC 1.2.1.26; EC 1.2.1.24 (characterized) 34% 94% 256.5 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) 64% 578.2
D-galacturonate catabolism dopDH lo Alpha-ketoglutaric semialdehyde dehydrogenase 1; alphaKGSA dehydrogenase 1; 2,5-dioxovalerate dehydrogenase 1; 2-oxoglutarate semialdehyde dehydrogenase 1; KGSADH-I; Succinate-semialdehyde dehydrogenase [NAD(+)]; SSDH; EC 1.2.1.26; EC 1.2.1.24 (characterized) 34% 94% 256.5 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) 64% 578.2
D-glucuronate catabolism dopDH lo Alpha-ketoglutaric semialdehyde dehydrogenase 1; alphaKGSA dehydrogenase 1; 2,5-dioxovalerate dehydrogenase 1; 2-oxoglutarate semialdehyde dehydrogenase 1; KGSADH-I; Succinate-semialdehyde dehydrogenase [NAD(+)]; SSDH; EC 1.2.1.26; EC 1.2.1.24 (characterized) 34% 94% 256.5 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) 64% 578.2
D-xylose catabolism dopDH lo Alpha-ketoglutaric semialdehyde dehydrogenase 1; alphaKGSA dehydrogenase 1; 2,5-dioxovalerate dehydrogenase 1; 2-oxoglutarate semialdehyde dehydrogenase 1; KGSADH-I; Succinate-semialdehyde dehydrogenase [NAD(+)]; SSDH; EC 1.2.1.26; EC 1.2.1.24 (characterized) 34% 94% 256.5 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) 64% 578.2
L-arginine catabolism patD lo aminobutyraldehyde dehydrogenase (EC 1.2.1.19) (characterized) 32% 92% 249.2 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) 64% 578.2
L-citrulline catabolism patD lo aminobutyraldehyde dehydrogenase (EC 1.2.1.19) (characterized) 32% 92% 249.2 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) 64% 578.2
putrescine catabolism patD lo aminobutyraldehyde dehydrogenase (EC 1.2.1.19) (characterized) 32% 92% 249.2 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) 64% 578.2
L-lysine catabolism patD lo aminobutyraldehyde dehydrogenase (EC 1.2.1.19) (characterized) 33% 95% 233 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) 64% 578.2
L-phenylalanine catabolism pad-dh lo aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) (characterized) 32% 88% 231.9 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) 64% 578.2
L-arginine catabolism kauB lo gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.54) (characterized) 31% 92% 224.9 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) 64% 578.2
L-arginine catabolism puuC lo gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.54) (characterized) 31% 92% 224.9 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) 64% 578.2
L-citrulline catabolism puuC lo gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.54) (characterized) 31% 92% 224.9 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) 64% 578.2
putrescine catabolism puuC lo gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.54) (characterized) 31% 92% 224.9 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) 64% 578.2
L-fucose catabolism aldA lo NAD+-dependent L-lactaldehyde dehydrogenase (EC 1.2.1.22) (characterized) 31% 95% 223 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) 64% 578.2
L-rhamnose catabolism aldA lo NAD+-dependent L-lactaldehyde dehydrogenase (EC 1.2.1.22) (characterized) 31% 95% 223 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) 64% 578.2
L-threonine catabolism aldA lo NAD+-dependent L-lactaldehyde dehydrogenase (EC 1.2.1.22) (characterized) 31% 95% 223 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) 64% 578.2
L-arginine catabolism astD lo aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) (characterized) 30% 88% 151.4 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) 64% 578.2
L-citrulline catabolism astD lo aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) (characterized) 30% 88% 151.4 succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) 64% 578.2

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000014265.1

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