GapMind for catabolism of small carbon sources

 

Protein WP_011612205.1 in Trichodesmium erythraeum IMS101

Annotation: NCBI__GCF_000014265.1:WP_011612205.1

Length: 423 amino acids

Source: GCF_000014265.1 in NCBI

Candidate for 17 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-arginine catabolism astC med Succinylornithine transaminase (EC 2.6.1.81) (characterized) 44% 96% 338.6 acetylornithine transaminase (EC 2.6.1.11) 44% 337.4
L-citrulline catabolism astC med Succinylornithine transaminase (EC 2.6.1.81) (characterized) 44% 96% 338.6 acetylornithine transaminase (EC 2.6.1.11) 44% 337.4
L-arginine catabolism rocD lo ornithine aminotransferase (EC 2.6.1.13) (characterized) 36% 89% 265 Succinylornithine transaminase (EC 2.6.1.81) 44% 338.6
L-citrulline catabolism rocD lo ornithine aminotransferase (EC 2.6.1.13) (characterized) 36% 89% 265 Succinylornithine transaminase (EC 2.6.1.81) 44% 338.6
L-arginine catabolism davT lo 4-aminobutyrate aminotransferase GabT; 5-aminovalerate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; L-AIBAT; EC 2.6.1.19; EC 2.6.1.48 (characterized) 37% 93% 244.6 Succinylornithine transaminase (EC 2.6.1.81) 44% 338.6
L-arginine catabolism gabT lo 4-aminobutyrate aminotransferase GabT; 5-aminovalerate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; L-AIBAT; EC 2.6.1.19; EC 2.6.1.48 (characterized) 37% 93% 244.6 Succinylornithine transaminase (EC 2.6.1.81) 44% 338.6
L-citrulline catabolism davT lo 4-aminobutyrate aminotransferase GabT; 5-aminovalerate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; L-AIBAT; EC 2.6.1.19; EC 2.6.1.48 (characterized) 37% 93% 244.6 Succinylornithine transaminase (EC 2.6.1.81) 44% 338.6
L-citrulline catabolism gabT lo 4-aminobutyrate aminotransferase GabT; 5-aminovalerate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; L-AIBAT; EC 2.6.1.19; EC 2.6.1.48 (characterized) 37% 93% 244.6 Succinylornithine transaminase (EC 2.6.1.81) 44% 338.6
L-lysine catabolism davT lo 4-aminobutyrate aminotransferase GabT; 5-aminovalerate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; L-AIBAT; EC 2.6.1.19; EC 2.6.1.48 (characterized) 37% 93% 244.6 Succinylornithine transaminase (EC 2.6.1.81) 44% 338.6
L-proline catabolism davT lo 4-aminobutyrate aminotransferase GabT; 5-aminovalerate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; L-AIBAT; EC 2.6.1.19; EC 2.6.1.48 (characterized) 37% 93% 244.6 Succinylornithine transaminase (EC 2.6.1.81) 44% 338.6
putrescine catabolism gabT lo 4-aminobutyrate aminotransferase GabT; 5-aminovalerate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; L-AIBAT; EC 2.6.1.19; EC 2.6.1.48 (characterized) 37% 93% 244.6 Succinylornithine transaminase (EC 2.6.1.81) 44% 338.6
L-arginine catabolism patA lo putrescine-2-oxoglutarate transaminase (EC 2.6.1.82) (characterized) 36% 81% 241.5 Succinylornithine transaminase (EC 2.6.1.81) 44% 338.6
L-citrulline catabolism patA lo putrescine-2-oxoglutarate transaminase (EC 2.6.1.82) (characterized) 36% 81% 241.5 Succinylornithine transaminase (EC 2.6.1.81) 44% 338.6
L-lysine catabolism patA lo putrescine-2-oxoglutarate transaminase (EC 2.6.1.82) (characterized) 36% 81% 241.5 Succinylornithine transaminase (EC 2.6.1.81) 44% 338.6
putrescine catabolism patA lo putrescine-2-oxoglutarate transaminase (EC 2.6.1.82) (characterized) 36% 81% 241.5 Succinylornithine transaminase (EC 2.6.1.81) 44% 338.6
L-lysine catabolism lat lo Ornithine aminotransferase; Orn-AT; Lysine aminotransferase; Lys-AT; EC 2.6.1.13; EC 2.6.1.36 (characterized) 34% 94% 236.9 Succinylornithine transaminase (EC 2.6.1.81) 44% 338.6
L-lysine catabolism lysN lo 2-aminoadipate transaminase (EC 2.6.1.39) (characterized) 33% 96% 214.2 Succinylornithine transaminase (EC 2.6.1.81) 44% 338.6

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000014265.1

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