GapMind for catabolism of small carbon sources

 

Protein WP_011612212.1 in Trichodesmium erythraeum IMS101

Annotation: NCBI__GCF_000014265.1:WP_011612212.1

Length: 552 amino acids

Source: GCF_000014265.1 in NCBI

Candidate for 8 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
D-mannose catabolism TM1749 med TM1749, component of Probable mannose/mannoside porter. Induced by beta-mannan (Conners et al., 2005). Regulated by mannose-responsive regulator manR (characterized) 43% 81% 219.2 Glutathione import ATP-binding protein GsiA; EC 7.4.2.10 42% 424.9
D-mannose catabolism TM1750 med TM1750, component of Probable mannose/mannoside porter. Induced by beta-mannan (Conners et al., 2005). Regulated by mannose-responsive regulator manR (characterized) 40% 77% 192.6 Glutathione import ATP-binding protein GsiA; EC 7.4.2.10 42% 424.9
D-cellobiose catabolism TM0027 lo TM0027, component of β-glucoside porter (Conners et al., 2005). Binds cellobiose, laminaribiose (Nanavati et al. 2006). Regulated by cellobiose-responsive repressor BglR (characterized) 39% 97% 188 Glutathione import ATP-binding protein GsiA; EC 7.4.2.10 42% 424.9
D-cellobiose catabolism cbtF lo CbtF, component of Cellobiose and cellooligosaccharide porter (characterized) 38% 79% 179.9 Glutathione import ATP-binding protein GsiA; EC 7.4.2.10 42% 424.9
L-histidine catabolism PA5503 lo Methionine import ATP-binding protein MetN 2, component of L-Histidine uptake porter, MetIQN (characterized) 40% 69% 178.7 Glutathione import ATP-binding protein GsiA; EC 7.4.2.10 42% 424.9
D-cellobiose catabolism cbtD lo CbtD, component of Cellobiose and cellooligosaccharide porter (characterized) 37% 71% 171 Glutathione import ATP-binding protein GsiA; EC 7.4.2.10 42% 424.9
putrescine catabolism potA lo PotG aka B0855, component of Putrescine porter (characterized) 36% 68% 169.1 Glutathione import ATP-binding protein GsiA; EC 7.4.2.10 42% 424.9
D-cellobiose catabolism TM0028 lo TM0028, component of β-glucoside porter (Conners et al., 2005). Binds cellobiose, laminaribiose (Nanavati et al. 2006). Regulated by cellobiose-responsive repressor BglR (characterized) 35% 73% 143.7 Glutathione import ATP-binding protein GsiA; EC 7.4.2.10 42% 424.9

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000014265.1

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