GapMind for catabolism of small carbon sources

 

Protein WP_011612358.1 in Trichodesmium erythraeum IMS101

Annotation: NCBI__GCF_000014265.1:WP_011612358.1

Length: 254 amino acids

Source: GCF_000014265.1 in NCBI

Candidate for 3 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
4-hydroxybenzoate catabolism mhpE med 4-hydroxy-2-oxovalerate aldolase; HOA; EC 4.1.3.39 (uncharacterized) 32% 92% 134.8 citrate synthase (unknown stereospecificity) (EC 2.3.3.16) 34% 134.8
L-tryptophan catabolism mhpE med 4-hydroxy-2-oxovalerate aldolase; HOA; EC 4.1.3.39 (uncharacterized) 32% 92% 134.8 citrate synthase (unknown stereospecificity) (EC 2.3.3.16) 34% 134.8
D-glucuronate catabolism garL lo 5-keto-4-deoxy-D-glucarate aldolase; KDGluc aldolase; KDGlucA; 2-dehydro-3-deoxy-D-glucarate aldolase; 2-keto-3-deoxy-D-glucarate aldolase; 5-dehydro-4-deoxy-D-glucarate aldolase; Alpha-keto-beta-deoxy-D-glucarate aldolase; EC 4.1.2.20 (characterized) 32% 95% 133.7 citrate synthase (unknown stereospecificity) (EC 2.3.3.16) 34% 134.8

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000014265.1

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