GapMind for catabolism of small carbon sources

 

Protein WP_011612882.1 in Trichodesmium erythraeum IMS101

Annotation: NCBI__GCF_000014265.1:WP_011612882.1

Length: 993 amino acids

Source: GCF_000014265.1 in NCBI

Candidate for 48 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-arginine catabolism putA hi L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) (characterized) 48% 98% 482.3
L-arginine catabolism putA hi pruA: putative delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88) (TIGR01237) 100% 801.8
L-arginine catabolism rocA hi L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) (characterized) 48% 98% 482.3
L-arginine catabolism rocA hi pruA: putative delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88) (TIGR01237) 100% 801.8
L-citrulline catabolism putA hi L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) (characterized) 48% 98% 482.3
L-citrulline catabolism putA hi pruA: putative delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88) (TIGR01237) 100% 801.8
L-citrulline catabolism rocA hi L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) (characterized) 48% 98% 482.3
L-citrulline catabolism rocA hi pruA: putative delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88) (TIGR01237) 100% 801.8
L-proline catabolism putA hi L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) (characterized) 48% 98% 482.3
L-proline catabolism putA hi pruA: putative delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88) (TIGR01237) 100% 801.8
L-arginine catabolism put1 lo L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (characterized) 33% 96% 474.6 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
L-citrulline catabolism put1 lo L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (characterized) 33% 96% 474.6 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
L-proline catabolism put1 lo L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (characterized) 33% 96% 474.6 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
L-arabinose catabolism xacF lo Alpha-ketoglutaric semialdehyde dehydrogenase; alphaKGSA dehydrogenase; 2,5-dioxovalerate dehydrogenase; EC 1.2.1.26 (characterized) 39% 95% 303.9 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
D-galacturonate catabolism dopDH lo Alpha-ketoglutaric semialdehyde dehydrogenase; alphaKGSA dehydrogenase; 2,5-dioxovalerate dehydrogenase; EC 1.2.1.26 (characterized) 39% 95% 303.9 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
D-glucuronate catabolism dopDH lo Alpha-ketoglutaric semialdehyde dehydrogenase; alphaKGSA dehydrogenase; 2,5-dioxovalerate dehydrogenase; EC 1.2.1.26 (characterized) 39% 95% 303.9 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
D-xylose catabolism dopDH lo Alpha-ketoglutaric semialdehyde dehydrogenase; alphaKGSA dehydrogenase; 2,5-dioxovalerate dehydrogenase; EC 1.2.1.26 (characterized) 39% 95% 303.9 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
L-fucose catabolism aldA lo lactaldehyde dehydrogenase (EC 1.2.1.22); 2,5-dioxovalerate dehydrogenase (EC 1.2.1.26) (characterized) 35% 96% 279.3 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
L-rhamnose catabolism aldA lo lactaldehyde dehydrogenase (EC 1.2.1.22); 2,5-dioxovalerate dehydrogenase (EC 1.2.1.26) (characterized) 35% 96% 279.3 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
L-threonine catabolism aldA lo lactaldehyde dehydrogenase (EC 1.2.1.22); 2,5-dioxovalerate dehydrogenase (EC 1.2.1.26) (characterized) 35% 96% 279.3 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
L-arginine catabolism gabD lo succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) (characterized) 35% 95% 273.5 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
L-citrulline catabolism gabD lo succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) (characterized) 35% 95% 273.5 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
putrescine catabolism gabD lo succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) (characterized) 35% 95% 273.5 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
4-hydroxybenzoate catabolism adh lo Aldehyde dehydrogenase [NAD(P)+] 2; EC 1.2.1.3 (characterized) 32% 96% 260.8 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
2'-deoxyinosine catabolism adh lo Aldehyde dehydrogenase [NAD(P)+] 2; EC 1.2.1.3 (characterized) 32% 96% 260.8 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
2-deoxy-D-ribose catabolism adh lo Aldehyde dehydrogenase [NAD(P)+] 2; EC 1.2.1.3 (characterized) 32% 96% 260.8 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
ethanol catabolism adh lo Aldehyde dehydrogenase [NAD(P)+] 2; EC 1.2.1.3 (characterized) 32% 96% 260.8 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
L-threonine catabolism adh lo Aldehyde dehydrogenase [NAD(P)+] 2; EC 1.2.1.3 (characterized) 32% 96% 260.8 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
thymidine catabolism adh lo Aldehyde dehydrogenase [NAD(P)+] 2; EC 1.2.1.3 (characterized) 32% 96% 260.8 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
L-tryptophan catabolism adh lo Aldehyde dehydrogenase [NAD(P)+] 2; EC 1.2.1.3 (characterized) 32% 96% 260.8 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
L-valine catabolism mmsA lo Malonate-semialdehyde dehydrogenase; MSA dehydrogenase; EC 1.2.1.-; Methylmalonate-semialdehyde dehydrogenase; MMSA dehydrogenase; MSDH; EC 1.2.1.27 (uncharacterized) 33% 98% 253.1 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
L-phenylalanine catabolism pad-dh lo aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) (characterized) 34% 92% 252.7 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
L-isoleucine catabolism iolA lo methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) (characterized) 33% 98% 250 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
myo-inositol catabolism mmsA lo methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) (characterized) 33% 98% 250 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
propionate catabolism iolA lo methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) (characterized) 33% 98% 250 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
L-threonine catabolism iolA lo methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) (characterized) 33% 98% 250 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
L-valine catabolism iolA lo methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) (characterized) 33% 98% 250 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
L-arginine catabolism patD lo aminobutyraldehyde dehydrogenase (EC 1.2.1.19) (characterized) 32% 94% 241.1 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
L-citrulline catabolism patD lo aminobutyraldehyde dehydrogenase (EC 1.2.1.19) (characterized) 32% 94% 241.1 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
putrescine catabolism patD lo aminobutyraldehyde dehydrogenase (EC 1.2.1.19) (characterized) 32% 94% 241.1 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
4-hydroxybenzoate catabolism praB lo 2-aminomuconic semialdehyde dehydrogenase; Aldehyde dehydrogenase 12; Aldehyde dehydrogenase family 8 member A1; EC 1.2.1.32 (characterized) 30% 97% 238.8 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
L-tryptophan catabolism nbaE lo 2-aminomuconic semialdehyde dehydrogenase; Aldehyde dehydrogenase 12; Aldehyde dehydrogenase family 8 member A1; EC 1.2.1.32 (characterized) 30% 97% 238.8 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
L-tryptophan catabolism praB lo 2-aminomuconic semialdehyde dehydrogenase; Aldehyde dehydrogenase 12; Aldehyde dehydrogenase family 8 member A1; EC 1.2.1.32 (characterized) 30% 97% 238.8 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
L-arabinose catabolism aldA lo lactaldehyde dehydrogenase (EC 1.2.1.22); D-glyceraldehyde dehydrogenase (NADP+) (EC 1.2.1.89) (characterized) 34% 94% 236.9 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
D-xylose catabolism aldA lo lactaldehyde dehydrogenase (EC 1.2.1.22); D-glyceraldehyde dehydrogenase (NADP+) (EC 1.2.1.89) (characterized) 34% 94% 236.9 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
L-arginine catabolism kauB lo gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.54) (characterized) 32% 95% 235.7 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
L-arginine catabolism puuC lo gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.54) (characterized) 32% 95% 235.7 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
L-citrulline catabolism puuC lo gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.54) (characterized) 32% 95% 235.7 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
putrescine catabolism puuC lo gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.54) (characterized) 32% 95% 235.7 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
L-lysine catabolism patD lo aminobutyraldehyde dehydrogenase (EC 1.2.1.19) (characterized) 31% 98% 231.9 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
L-arginine catabolism astD lo N-succinylglutamate 5-semialdehyde dehydrogenase; Succinylglutamic semialdehyde dehydrogenase; SGSD; EC 1.2.1.71 (characterized) 32% 91% 213.8 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
L-citrulline catabolism astD lo N-succinylglutamate 5-semialdehyde dehydrogenase; Succinylglutamic semialdehyde dehydrogenase; SGSD; EC 1.2.1.71 (characterized) 32% 91% 213.8 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3
L-lysine catabolism amaB lo Δ1-piperideine-6-carboxylate dehydrogenase (characterized) 30% 84% 175.6 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) 48% 482.3

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000014265.1

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