GapMind for catabolism of small carbon sources

 

Protein WP_011613084.1 in Trichodesmium erythraeum IMS101

Annotation: NCBI__GCF_000014265.1:WP_011613084.1

Length: 338 amino acids

Source: GCF_000014265.1 in NCBI

Candidate for 1 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
2'-deoxyinosine catabolism nupB lo Purine/cytidine ABC transporter permease protein, component of General nucleoside uptake porter, NupABC/BmpA (transports all common nucleosides as well as 5-fluorocytidine, inosine, deoxyuridine and xanthosine) (Martinussen et al., 2010) (Most similar to 3.A.1.2.12). NupA is 506aas with two ABC (C) domains. NupB has 8 predicted TMSs, NupC has 9 or 10 predicted TMSs in a 4 + 1 (or 2) + 4 arrangement (characterized) 32% 93% 184.5 Glucose ABC transporter permease protein TsgB13 35% 208.8

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000014265.1

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