GapMind for catabolism of small carbon sources

 

Protein WP_011613429.1 in Trichodesmium erythraeum IMS101

Annotation: NCBI__GCF_000014265.1:WP_011613429.1

Length: 492 amino acids

Source: GCF_000014265.1 in NCBI

Candidate for 6 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
D-lactate catabolism glcD hi D-lactate oxidase and glycolate oxidase, FAD-linked subunit (EC 1.1.3.15) (characterized) 50% 92% 465.3 lactate dehydrogenase (NAD+, ferredoxin) (subunit 1/3) (EC 1.3.1.110) 33% 238.0
L-threonine catabolism glcD hi D-lactate oxidase and glycolate oxidase, FAD-linked subunit (EC 1.1.3.15) (characterized) 50% 92% 465.3 lactate dehydrogenase (NAD+, ferredoxin) (subunit 1/3) (EC 1.3.1.110) 33% 238.0
D-lactate catabolism lctD lo lactate dehydrogenase (NAD+, ferredoxin) (subunit 1/3) (EC 1.3.1.110) (characterized) 33% 92% 238 glycolate dehydrogenase (EC 1.1.99.14) 70% 694.1
L-threonine catabolism lctD lo lactate dehydrogenase (NAD+, ferredoxin) (subunit 1/3) (EC 1.3.1.110) (characterized) 33% 92% 238 glycolate dehydrogenase (EC 1.1.99.14) 70% 694.1
D-lactate catabolism D-LDH lo D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) (characterized) 32% 95% 231.1 glycolate dehydrogenase (EC 1.1.99.14) 70% 694.1
L-threonine catabolism D-LDH lo D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) (characterized) 32% 95% 231.1 glycolate dehydrogenase (EC 1.1.99.14) 70% 694.1

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000014265.1

New query