GapMind for catabolism of small carbon sources

 

Protein WP_011614263.1 in Trichodesmium erythraeum IMS101

Annotation: NCBI__GCF_000014265.1:WP_011614263.1

Length: 343 amino acids

Source: GCF_000014265.1 in NCBI

Candidate for 4 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-isoleucine catabolism bkdA lo 2-oxoisovalerate dehydrogenase subunit alpha; Branched-chain alpha-keto acid dehydrogenase E1 component alpha chain; BCKDH E1-alpha; EC 1.2.4.4 (characterized) 35% 86% 184.9 TPP-dependent acetoin dehydrogenase complex, E1 component, alpha subunit; EC 1.1.1.- 40% 258.5
L-leucine catabolism bkdA lo 2-oxoisovalerate dehydrogenase subunit alpha; Branched-chain alpha-keto acid dehydrogenase E1 component alpha chain; BCKDH E1-alpha; EC 1.2.4.4 (characterized) 35% 86% 184.9 TPP-dependent acetoin dehydrogenase complex, E1 component, alpha subunit; EC 1.1.1.- 40% 258.5
L-valine catabolism bkdA lo 2-oxoisovalerate dehydrogenase subunit alpha; Branched-chain alpha-keto acid dehydrogenase E1 component alpha chain; BCKDH E1-alpha; EC 1.2.4.4 (characterized) 35% 86% 184.9 TPP-dependent acetoin dehydrogenase complex, E1 component, alpha subunit; EC 1.1.1.- 40% 258.5
L-phenylalanine catabolism PPDCalpha lo phenylpyruvate decarboxylase (EC 4.1.1.43) (characterized) 31% 83% 143.7 TPP-dependent acetoin dehydrogenase complex, E1 component, alpha subunit; EC 1.1.1.- 40% 258.5

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000014265.1

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