Alignments for a candidate for hisA in Rhizobium johnstonii 3841

Align 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (characterized)
to candidate WP_011649868.1 RL_RS00215 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase

Query= reanno::Smeli:SMc02570
         (247 letters)



>NCBI__GCF_000009265.1:WP_011649868.1
          Length = 248

 Score =  426 bits (1095), Expect = e-124
 Identities = 214/243 (88%), Positives = 229/243 (94%)

Query: 1   MILFPAIDLKDGQCVRLKLGDMEQATVYNPDPAAQARAFEEQGFEWLHVVDLNGAFAGET 60
           MILFPAIDLK GQCVRLKLGDM+QATVYN DPAAQAR+FE+QGFEWLHVVDL+GAFAG +
Sbjct: 1   MILFPAIDLKGGQCVRLKLGDMQQATVYNTDPAAQARSFEDQGFEWLHVVDLDGAFAGHS 60

Query: 61  VNGAAVDAILKATKNPVQLGGGIRTLEHIENWLSRGLKRVILGTVAVRDPALVIEACRKF 120
            NG AV+AILKAT NPVQLGGGIRTL+HIE WLSRGL+RVILGTVAVR+P LVIEACRKF
Sbjct: 61  ANGDAVEAILKATDNPVQLGGGIRTLDHIEAWLSRGLRRVILGTVAVRNPDLVIEACRKF 120

Query: 121 PGRVAVGIDAKGGKVAVEGWAEASELGVVELARKFEGAGVAAIIYTDIDRDGILTGINWA 180
           P  VAVGIDAKGGKVAVEGWAEASELG++ELARKFEGAGVAAIIYTDIDRDGIL GINW+
Sbjct: 121 PDHVAVGIDAKGGKVAVEGWAEASELGIIELARKFEGAGVAAIIYTDIDRDGILAGINWS 180

Query: 181 STLELADAVSIPVIASGGLASMDDIRRMTEPDAQKLEGAISGRALYDGRIDPKEALDLIR 240
           STLELADAVSIPVIASGGLAS+DDIRRM EPDA+KLEGAISGRALYDGRIDPKEAL LI+
Sbjct: 181 STLELADAVSIPVIASGGLASLDDIRRMLEPDARKLEGAISGRALYDGRIDPKEALALIK 240

Query: 241 EAR 243
            AR
Sbjct: 241 AAR 243


Lambda     K      H
   0.319    0.138    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 356
Number of extensions: 13
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 248
Length adjustment: 24
Effective length of query: 223
Effective length of database: 224
Effective search space:    49952
Effective search space used:    49952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)

Align candidate WP_011649868.1 RL_RS00215 (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase)
to HMM TIGR00007 (hisA: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.21257.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21257.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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