Alignments for a candidate for trpD_2 in Rhizobium johnstonii 3841

Align Anthranilate phosphoribosyltransferase; EC 2.4.2.18 (characterized)
to candidate WP_011652053.1 RL_RS12845 anthranilate phosphoribosyltransferase

Query= SwissProt::P83827
         (329 letters)



>NCBI__GCF_000009265.1:WP_011652053.1
          Length = 338

 Score =  249 bits (637), Expect = 5e-71
 Identities = 145/325 (44%), Positives = 190/325 (58%), Gaps = 7/325 (2%)

Query: 6   KAILGEVLEEEEAYEVMRALMAGEVSPVRAAGLLVALSLRGERPHEIAAMARAMREAARP 65
           KA   E L  EEA      LM+G+ +P +  G L+AL +RGE   EI     +MR     
Sbjct: 10  KAASREPLTREEARSAFDILMSGQATPSQIGGFLMALRVRGETVDEIVGAVASMRSKMLT 69

Query: 66  LRVHRRPLLDIVGTGGDGKGLMNLSTLAALVAAAGGVAVAKHGNRAASSRAGSADLLEAL 125
           +       +DIVGTGGD  G  N+STLAAL+ A  GV VAKHGNRA SS++G+AD L AL
Sbjct: 70  VEAPA-DAIDIVGTGGDASGTYNISTLAALIVAGAGVPVAKHGNRALSSKSGAADNLAAL 128

Query: 126 GVDLEAPPERVGEAIEELGFGFLFARVFHPAMRHVAPVRAELGVRTVFNLLGPLTNPAGA 185
           GV L+  PE +   I E G GF+FA++ H AMRHV P R ELG RT+FNLLGPL+NPAG 
Sbjct: 129 GVKLDVGPEIISRCIAEAGVGFMFAQMHHSAMRHVGPSRVELGTRTIFNLLGPLSNPAGV 188

Query: 186 DAYVLGVFSPEWLAPMAEALERLGARGL-VVHGEGADEL-VLGENRVVEVGKG---AYAL 240
              +LGVFSP+WL P+AE +  LG+  + VVHG+G DE+   G  +V  +  G    + L
Sbjct: 189 RRQLLGVFSPQWLVPLAEVMRDLGSECVWVVHGDGLDEITTTGITKVAALEDGKIRTFEL 248

Query: 241 TPEEVGLKRAPLEALKGGGPEENAALARRLLKGEEKGPLADAVALAAGAGFYAAGKTPSL 300
           +P + G+    L  +KGG    NAA  R +L G  K    D     A A    AGK  ++
Sbjct: 249 SPADFGVSPCVLADIKGGDGVANAAALREVL-GGAKNAYRDVSLANAAASLVIAGKVETI 307

Query: 301 KEGVALAREVLASGEAYLLLERYVA 325
            +G+ LA + L SG   L L++ +A
Sbjct: 308 HDGMTLAAQSLDSGATALALDKLIA 332


Lambda     K      H
   0.317    0.136    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 290
Number of extensions: 19
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 338
Length adjustment: 28
Effective length of query: 301
Effective length of database: 310
Effective search space:    93310
Effective search space used:    93310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_011652053.1 RL_RS12845 (anthranilate phosphoribosyltransferase)
to HMM TIGR01245 (trpD: anthranilate phosphoribosyltransferase (EC 2.4.2.18))

Software error:

../bin/blast/fastacmd -i /tmp/list.637.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.637.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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