Alignments for a candidate for thrC in Azoarcus olearius BH72

Align threonine synthase (EC 4.2.3.1) (characterized)
to candidate WP_011765811.1 AZO_RS10505 threonine synthase

Query= BRENDA::Q2SWH9
         (483 letters)



>NCBI__GCF_000061505.1:WP_011765811.1
          Length = 487

 Score =  669 bits (1727), Expect = 0.0
 Identities = 345/483 (71%), Positives = 389/483 (80%), Gaps = 6/483 (1%)

Query: 1   MNYISTRG-AGIGERHTFSDILLGGLAKDGGLYLPSEYPQVSADELARWRTLPYADLAFE 59
           M YISTRG AG      F DILLGGLA DGGLYLP  YPQV+  EL  WR L YADLAF 
Sbjct: 1   MKYISTRGHAGQPANPEFCDILLGGLAPDGGLYLPETYPQVTRAELDAWRKLSYADLAFA 60

Query: 60  ILSKFCDDIAAADLRAITRRTYTADVYRHARRGGNAADITPLTTLGTENGAPVS--LLEL 117
           ILSKF  DI AADL+AI  +TYTADVYRH R G N ADITP+  L  +     S  LLEL
Sbjct: 61  ILSKFITDIPAADLKAICDKTYTADVYRHVRAGDNPADITPVHWLEKDAAGKGSFGLLEL 120

Query: 118 SNGPTLAFKDMAMQLLGNLFEYTLAKHGETLNILGATSGDTGSAAEYAMRGKEGVRVFML 177
           SNGPTLAFKDMAMQLLGNLFEY LAK  ET+NILGATSGDTGSAAEYAMRGK GVRVFML
Sbjct: 121 SNGPTLAFKDMAMQLLGNLFEYVLAKRSETINILGATSGDTGSAAEYAMRGKHGVRVFML 180

Query: 178 SPHKKMSAFQTAQMYSLQDPNIFNLAVNGVFDDCQDIVKAVSNDHAFKAQQKIGTVNSIN 237
           SPH KMSAFQ AQMYSLQD NIFN+AV G+FDD QDIVKAVSNDHAFKA+ KIG VNSIN
Sbjct: 181 SPHGKMSAFQRAQMYSLQDGNIFNIAVTGMFDDAQDIVKAVSNDHAFKAKYKIGAVNSIN 240

Query: 238 WARVVAQVVYYFKGYFAATRSNDERVSFTVPSGNFGNVCAGHIARMMGLPIEKLVVATNE 297
           WARV AQ+VYYFKGYFAAT SND++V+F VPSGNFGN+CAGHIAR MGLP+ KL++ATNE
Sbjct: 241 WARVAAQIVYYFKGYFAATESNDQQVAFCVPSGNFGNICAGHIARQMGLPVAKLILATNE 300

Query: 298 NDVLDEFFRTGAYRVRSAQDTYHTSSPSMDISKASNFERFVFDLLGRDPARVVQLFRDVE 357
           NDVLDEFFRTG YR R A +T+ TSSPSMDISKASNFERFVFDL+GRDP +V  L++ V+
Sbjct: 301 NDVLDEFFRTGVYRPRKAAETHVTSSPSMDISKASNFERFVFDLVGRDPQKVAALWKQVD 360

Query: 358 QKGGFDLAASGDFARVAEFGFVSGRSTHADRIATIRDVFERYRTMIDTHTADGLKVAREH 417
               FDL ASG+F+R+  FGF SG S+HADR+ATIR VF++Y  MIDTHTADG+KVA E 
Sbjct: 361 GGAAFDLTASGEFSRIGGFGFASGSSSHADRLATIRKVFDKYGVMIDTHTADGVKVAWEK 420

Query: 418 ---LRPGVPMVVLETAQPIKFGESIREALGQEPSRPAAFDGLEALPQRFEVVDANAQQVK 474
              +  GVP++VLETA P+KF E+I+EALG+EP RPA  +G+EALPQR EV+  + + VK
Sbjct: 421 ADTVPAGVPVLVLETALPVKFAETIQEALGREPERPADLEGIEALPQRVEVMAPDVEAVK 480

Query: 475 DFI 477
            FI
Sbjct: 481 RFI 483


Lambda     K      H
   0.320    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 733
Number of extensions: 21
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 487
Length adjustment: 34
Effective length of query: 449
Effective length of database: 453
Effective search space:   203397
Effective search space used:   203397
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)

Align candidate WP_011765811.1 AZO_RS10505 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.30672.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30672.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.