Alignments for a candidate for argI in Azoarcus olearius BH72

Align Ornithine carbamoyltransferase (EC 2.1.3.3) (characterized)
to candidate WP_011765918.1 AZO_RS11055 ornithine carbamoyltransferase

Query= reanno::HerbieS:HSERO_RS07185
         (304 letters)



>NCBI__GCF_000061505.1:WP_011765918.1
          Length = 311

 Score =  454 bits (1168), Expect = e-132
 Identities = 219/300 (73%), Positives = 253/300 (84%), Gaps = 1/300 (0%)

Query: 4   KHYLQFSDFTLDEYEYVIERSRVIKRKFKNYEPHHTLADRTLVMVFEKNSTRTRLSFEAG 63
           +HYLQFSDFT  EY++V +R+R IK KFK YEP+H L DRTLVM+FEK STRTRLSFEAG
Sbjct: 5   RHYLQFSDFTAAEYDHVFQRTRWIKEKFKQYEPYHPLFDRTLVMIFEKASTRTRLSFEAG 64

Query: 64  MHQMGGAAIYLNTRDSQLGRGEPVEDAAQVMSRMCDVIMIRTYGQEIIERFAKHSRVPVI 123
           M Q+GG+AIYLNTRDSQLGRGEPVEDAAQV+SRM D++MIRT+ Q+IIERFA +SRVPVI
Sbjct: 65  MQQLGGSAIYLNTRDSQLGRGEPVEDAAQVISRMSDLVMIRTFEQDIIERFAAYSRVPVI 124

Query: 124 NGLTNEQHPCQVLADVFTYIEHHGSIQGKIVAWVGDANNMLYSWLQAAEVFGFHVNVSTP 183
           NGLTNE HPCQ+LAD++T+IEH GSI+GK VAWVGD+NNM  +WLQAAEV  F V VSTP
Sbjct: 125 NGLTNEYHPCQILADIYTFIEHRGSIKGKTVAWVGDSNNMCNTWLQAAEVLDFKVRVSTP 184

Query: 184 KGYDIDPAQVS-PGNKNYTFFADPADACQDADLVTTDVWTSMGFEAENNARLKAFDGWIV 242
            GY+++P      G  ++  F+DP +AC+ ADLVTTDVWTSMGFEAEN AR+KAF  W V
Sbjct: 185 PGYEVEPTDAGLRGTAHFAQFSDPLEACRGADLVTTDVWTSMGFEAENEARMKAFADWCV 244

Query: 243 DQAKMARAKKDALFMHCLPAHRGEEVAAEVIDGPQSVVWEEAENRLHVQKALLEYLVHGR 302
           D   M+ A  DALFMHCLPAHRGEEV AEVIDGPQSVVW+EAENRLHVQKAL+EYLV GR
Sbjct: 245 DAEMMSVAAPDALFMHCLPAHRGEEVTAEVIDGPQSVVWDEAENRLHVQKALMEYLVLGR 304


Lambda     K      H
   0.321    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 374
Number of extensions: 11
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 311
Length adjustment: 27
Effective length of query: 277
Effective length of database: 284
Effective search space:    78668
Effective search space used:    78668
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)

Align candidate WP_011765918.1 AZO_RS11055 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.19649.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19649.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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