Alignments for a candidate for argB in Azoarcus olearius BH72

Align acetylglutamate kinase (EC 2.7.2.8) (characterized)
to candidate WP_011766967.1 AZO_RS16300 acetylglutamate kinase

Query= BRENDA::Q9HTN2
         (301 letters)



>NCBI__GCF_000061505.1:WP_011766967.1
          Length = 300

 Score =  365 bits (938), Expect = e-106
 Identities = 184/287 (64%), Positives = 230/287 (80%), Gaps = 2/287 (0%)

Query: 12  AKVLSEALPYIRRFVGKTLVIKYGGNAMESEELKAGFARDVVLMKAVGINPVVVHGGGPQ 71
           A++L+EALPYI+RF  KT+VIKYGGNAM    LK  FARDVVL+K VG+NPVVVHGGGPQ
Sbjct: 16  AEILAEALPYIKRFFDKTIVIKYGGNAMTDPHLKDCFARDVVLLKLVGLNPVVVHGGGPQ 75

Query: 72  IGDLLKRLSIESHFIDGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHGGSAIGLTGKDA 131
           I  LL ++  +  F+ GMRVTDA TM+VVEMVLGGQVNK+IVNLIN+ GG A+GLTGKDA
Sbjct: 76  IETLLAKVGKKGEFVQGMRVTDAETMEVVEMVLGGQVNKEIVNLINQAGGKAVGLTGKDA 135

Query: 132 ELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVKGDFIPVIAPIGVGSNG 191
             IRAKKL +  Q  +    ++ID+G VGE+T ++  L++ L +GDFIPVIAPIGVG NG
Sbjct: 136 SFIRAKKLLM--QKLDAPAGDVIDVGQVGEITTIDPSLISFLDQGDFIPVIAPIGVGDNG 193

Query: 192 ESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKQGQVLTGLSTEQVNELIADGTIYGG 251
           E+YNINAD+VAGK+AE LKAEKL+LLTN  G++DK G +LTGL+  Q+++L+ADGT+ GG
Sbjct: 194 ETYNINADVVAGKLAEILKAEKLVLLTNTPGVLDKAGNLLTGLTPRQIDDLVADGTLSGG 253

Query: 252 MLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNR 298
           MLPKI  AL+A + GV S HIIDGRV + +LLEI TD GVGT+I ++
Sbjct: 254 MLPKIGSALDAARNGVKSVHIIDGRVEHCLLLEILTDHGVGTMIKSK 300


Lambda     K      H
   0.318    0.138    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 362
Number of extensions: 18
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 300
Length adjustment: 27
Effective length of query: 274
Effective length of database: 273
Effective search space:    74802
Effective search space used:    74802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate WP_011766967.1 AZO_RS16300 (acetylglutamate kinase)
to HMM TIGR00761 (argB: acetylglutamate kinase (EC 2.7.2.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.6549.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6549.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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