Align carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) (characterized)
to candidate WP_011779880.1 MVAN_RS13380 carbamoyl-phosphate synthase large subunit
Query= BRENDA::P00968
(1073 letters)
>NCBI__GCF_000015305.1:WP_011779880.1
Length = 1112
Score = 1064 bits (2752), Expect = 0.0
Identities = 582/1123 (51%), Positives = 750/1123 (66%), Gaps = 64/1123 (5%)
Query: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM 60
MP+R D+ +L++G+GPI+IGQA EFDYSG QAC+ LR EG +V L+NSNPATIMTDPE
Sbjct: 1 MPRRPDLNHVLVIGSGPILIGQAAEFDYSGTQACRVLRAEGLQVTLINSNPATIMTDPEY 60
Query: 61 ADATYIEPIHWEVVRKIIEKE-----RPDAVLPTMGGQTALNCALELERQGVLEEFGVTM 115
AD TY+EPI E V K+I ++ + DA+L T+GGQTALN A++L G LE +GV +
Sbjct: 61 ADHTYVEPITAEFVEKVIAQQAERGNKIDALLATLGGQTALNTAVKLSENGALERYGVEL 120
Query: 116 IGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMG 175
IGA +AI + EDR++F + K+G E+ARS + TM+E AD+G P ++RPSFTMG
Sbjct: 121 IGADFEAIQRGEDRQKFKDIVTKVGGESARSRVCFTMDEVRDTVADLGLPVVVRPSFTMG 180
Query: 176 GSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIE 235
G G G+AY+ E+ E + GL SP+ +LI+ES+ GWKEYE+E++RD +DN ++VCSIE
Sbjct: 181 GLGSGMAYSAEDVERMAGDGLAASPSANVLIEESIYGWKEYELELMRDGHDNVVVVCSIE 240
Query: 236 NFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRL 295
NFD MG+HTGDS+TVAPA TLTD+EYQ MR + +LRE+GV+TGG N+QFAVNPK+GRL
Sbjct: 241 NFDPMGVHTGDSVTVAPAMTLTDREYQTMRTLGIEILREVGVDTGGCNIQFAVNPKDGRL 300
Query: 296 IVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYV 355
IVIEMNPRVSRSSALASKATGFPIAK+AAKLA+GYTLDE++NDIT TPA FEP++DYV
Sbjct: 301 IVIEMNPRVSRSSALASKATGFPIAKIAAKLAIGYTLDEIVNDIT-KETPACFEPTLDYV 359
Query: 356 VTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGF----DP 411
V K PRF FEKF GA+ LTT MKSVGE M++GR E+L K +R LE G GF DP
Sbjct: 360 VVKAPRFAFEKFPGADGTLTTTMKSVGEAMSLGRNFIEALGKVMRSLETGRAGFWTGPDP 419
Query: 412 KVSLDDPEALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVR 471
+ S+D E LT+ L A R++ I A R G +V+ V + +D WF+ QI LV
Sbjct: 420 EGSVD--EVLTR----LHTATDGRLYDIEYALRLGATVEQVAVASGVDPWFVEQIGRLVA 473
Query: 472 LEEKVAEVGITGLNADFLRQLKRKGFADARLA----KLAGVREAEIRKLRDQYDLHPVYK 527
L ++ + + G + LR+ K G +D ++A +LAG E +R LR + +HPV+K
Sbjct: 474 LRAELIDAPVLG--EELLRRSKHNGLSDRQIAALRPELAG--EMGVRVLRQRLGIHPVFK 529
Query: 528 RVDTCAAEFATDTAYMYSTYE----EECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCV 583
VDTCAAEF T Y YS+YE E E P +R K+++LG GPNRIGQGIEFDY CV
Sbjct: 530 TVDTCAAEFEARTPYHYSSYELDPSAETEVAPQAERPKVLILGSGPNRIGQGIEFDYSCV 589
Query: 584 HASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPK------- 636
HA+ L E G+ET+M+NCNPETVSTDYDT+DRLYFEP+T EDVLEI E+
Sbjct: 590 HAATTLTEAGFETVMINCNPETVSTDYDTADRLYFEPLTFEDVLEIYYAEQASGEGGPGV 649
Query: 637 -GVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATV 695
GVIVQ GGQTPL LA LE AGVP++GT P+AID AEDR F + R L P
Sbjct: 650 VGVIVQLGGQTPLGLAERLEKAGVPIVGTLPEAIDLAEDRGEFGEVLRRAGLPAPRFGMA 709
Query: 696 TAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHF 755
T+ + A A EIGYP++VRPSYVLGGR MEIVYDE L Y A +S + PVL+D F
Sbjct: 710 TSFDQARRIAAEIGYPVLVRPSYVLGGRGMEIVYDEETLEGYITRATELSPEHPVLVDRF 769
Query: 756 LDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQK 815
L+DA+E+DVDA+CDG V IGG+MEHIE+AG+HSGDSAC+LP TL + + +R+ +
Sbjct: 770 LEDAIEIDVDALCDGTEVYIGGVMEHIEEAGIHSGDSACALPPVTLGRSDIEAVRRATEA 829
Query: 816 LAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLA 875
+AF + V GL+NVQ+A+K++ +Y++E NPRA+RTVPFVSKAT VPLAK AR+M G ++A
Sbjct: 830 IAFGIGVVGLLNVQYALKDDVLYVLEANPRASRTVPFVSKATAVPLAKACARIMLGATIA 889
Query: 876 ---EQG---------VTKEVIPPYYSVKEVVLPFNKF-----PGVDPLLGPEMRSTGEVM 918
E+G VT P +VKE VLPF++F +D LLGPEM+STGEVM
Sbjct: 890 QLREEGVLASTGDGAVTARNAP--VAVKEAVLPFHRFRKADGSQIDSLLGPEMKSTGEVM 947
Query: 919 GVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTA 978
G+ F AFAK+Q + ++ G +SV DK +V +L GF + AT GTA
Sbjct: 948 GIAADFGSAFAKSQTAAYGSLPAQGTVFVSVANRDKRSLVFPVKRLADLGFRVLATEGTA 1007
Query: 979 IVLGEAGINPRLVNK----VHEGRPHIQ--DRIKNGEYTYIINTTSGRRAIE-DSRVIRR 1031
+L GI V K EG P + D IK G +INT G D IR
Sbjct: 1008 EMLRRNGIPCEEVRKHFQEFSEGLPQMSAVDAIKAGHVDMVINTPYGNSGPRIDGYEIRS 1067
Query: 1032 SALQYKVHYDTTLNGGFATAMALNADATEK--VISVQEMHAQI 1072
+A+ + TT+ G A + A V S+QE+H+ +
Sbjct: 1068 AAVSMNIPCVTTVQGASAAVQGIEAGIRGDIGVRSLQELHSAL 1110
Lambda K H
0.318 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3015
Number of extensions: 137
Number of successful extensions: 19
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1073
Length of database: 1112
Length adjustment: 46
Effective length of query: 1027
Effective length of database: 1066
Effective search space: 1094782
Effective search space used: 1094782
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Align candidate WP_011779880.1 MVAN_RS13380 (carbamoyl-phosphate synthase large subunit)
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.29193.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.29193.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.