Alignments for a candidate for ilvA in Polaromonas naphthalenivorans CJ2

Align threonine deaminase (EC 4.3.1.19) (characterized)
to candidate WP_011799546.1 PNAP_RS00550 threonine ammonia-lyase

Query= reanno::Caulo:CCNA_03750
         (400 letters)



>NCBI__GCF_000015505.1:WP_011799546.1
          Length = 400

 Score =  405 bits (1041), Expect = e-117
 Identities = 201/393 (51%), Positives = 278/393 (70%)

Query: 3   LDLAAIQAAAGRLQGQIERTPCRHSKTLSKITGAEVWVKFENLQFTAAYKERGALNKLML 62
           L L  I+ AA RL G +  TPC  S+TLS++TGA++++KFENLQ+TA++KERGA NKL  
Sbjct: 2   LSLTVIEQAAQRLHGHLLDTPCVESRTLSQLTGAQIYLKFENLQYTASFKERGACNKLAQ 61

Query: 63  LSETEKQRGVIAASAGNHAQGLAYHGARLGVPVTIVMPKTTPFVKVQHTRDFGATVVIEG 122
           L+E+E+QRGVIA SAGNHAQG+AYH  RLG+   IVMP+ TP VK++ TR FGA VV+ G
Sbjct: 62  LTESERQRGVIAMSAGNHAQGVAYHAQRLGIRAVIVMPRFTPGVKIERTRGFGAEVVLHG 121

Query: 123 ETYDDANAHARKLRDEQGLTFVHPFDDYDIMAGQGTIALEMLEDAPDLEILPVPIGGGGL 182
           +T D + AHA  L + + L FVHP+DD  I+AGQGT+ LEML   P+LE+L + +GGGGL
Sbjct: 122 DTLDASRAHAMGLAEREKLVFVHPYDDEAIVAGQGTVGLEMLHAVPELEVLVIAVGGGGL 181

Query: 183 ISGVATAAKALKPDIRIIGCEPAMYPSFTAKMRGVAAHCGGQTIAEGVAVKQVGELTYGV 242
           I+GVATAAKALKP I IIG + + +P+    ++G     G  TIA+G+AV   G +   +
Sbjct: 182 IAGVATAAKALKPGIEIIGVQTSRFPAMVNAIKGTHHPQGTSTIADGIAVGTPGVIAQAI 241

Query: 243 VRPLLDDVLLLEEPYLEQAVSLYCNVEKTIAEGAGAASLAALLAYPERFRGKKCGLILCG 302
           +   +DD+LL++E  +EQA+ +   +EKT+ EGAGAA LAALL YP RF G+K GL+LCG
Sbjct: 242 IAEKVDDLLLVDEGDIEQAMVMLLEIEKTLVEGAGAAGLAALLKYPARFAGRKVGLVLCG 301

Query: 303 GNIDTRLLASVLTRELVRAQRLASLRIIGDDRPGLLSTVASVIGAMGANIIEVNHNRLAL 362
           GNID  LLA+++ R +VRA RLA +R+   D PG L+ + + +   GANI EV+H R   
Sbjct: 302 GNIDPLLLAAIIERGMVRAGRLARIRVSARDIPGSLAKITATVADAGANIEEVHHQRAFT 361

Query: 363 DVPAKGAEFDITIETRDAQHTQEVMEALRESGY 395
            + A+  E ++ ++TR   H  +V++ALR +G+
Sbjct: 362 MLAAQNVEIELVLQTRGRPHIAQVLQALRTAGF 394


Lambda     K      H
   0.319    0.136    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 364
Number of extensions: 9
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 400
Length adjustment: 31
Effective length of query: 369
Effective length of database: 369
Effective search space:   136161
Effective search space used:   136161
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)

Align candidate WP_011799546.1 PNAP_RS00550 (threonine ammonia-lyase)
to HMM TIGR01127 (ilvA: threonine ammonia-lyase (EC 4.3.1.19))

Software error:

../bin/blast/fastacmd -i /tmp/list.1476.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1476.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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