Alignments for a candidate for ilvE in Polaromonas naphthalenivorans CJ2

Align Branched-chain amino acid aminotransferase (EC 2.6.1.42) (characterized)
to candidate WP_011799582.1 PNAP_RS00730 branched-chain amino acid transaminase

Query= reanno::BFirm:BPHYT_RS16285
         (307 letters)



>NCBI__GCF_000015505.1:WP_011799582.1
          Length = 313

 Score =  444 bits (1143), Expect = e-129
 Identities = 210/307 (68%), Positives = 256/307 (83%), Gaps = 1/307 (0%)

Query: 2   SMADRDGKIWMDGKLIDWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLQEHTK 61
           SM +RDGKIWMDG++++WRDAKIHVLTHTLHYG G FEGVRAYK  DGGTAIFRL+EHT+
Sbjct: 7   SMENRDGKIWMDGQMVEWRDAKIHVLTHTLHYGCGAFEGVRAYKMPDGGTAIFRLEEHTE 66

Query: 62  RLLNSAKIFQMDVPFDHETLAAAQCEVVRENKLESCYLRPIIWVGSEKLGVSAKGNTIHV 121
           RL NSAKI +M +PF  + +  AQ  VVRENKLES Y+RP+ W+GSEKLGVS KGNTIH+
Sbjct: 67  RLFNSAKILRMKIPFTPQEVMDAQLAVVRENKLESGYIRPLTWIGSEKLGVSPKGNTIHL 126

Query: 122 AIAAWPWGAYLGEDGIAKGIRVKTSSFTRHHVNVSMVRAKASGWYVNSILANQEAIADGY 181
            +AAW WGAYLGE+G+ +GIRVKTSSFTRHHVN++M+ AKA   Y NSILAN EA  +GY
Sbjct: 127 MVAAWTWGAYLGEEGMKRGIRVKTSSFTRHHVNITMIHAKAVSNYTNSILANMEATDEGY 186

Query: 182 DEALLLDVDGYVSEGSGENFFLVNNGKLYTPDLSS-CLDGITRDTVITLARDAGIQVIEK 240
           DEALLLD  G+ SEG+GEN F+V  G +YTPD S+  L+GITR+TV ++ +D GI++ EK
Sbjct: 187 DEALLLDPQGFASEGAGENLFIVRKGVVYTPDSSAGALNGITRNTVFSICKDLGIEIREK 246

Query: 241 RITRDEVYTCDEAFFTGTAAEVTPIRELDNRTIGSGARGPITEKLQSGFFDIVNGKSDKY 300
            ITRDE+Y  DEAFF+GTAAEVTPIRELD   IGSG+RGPITEK+Q+ FFDIVNG++ +Y
Sbjct: 247 PITRDEIYISDEAFFSGTAAEVTPIRELDRIEIGSGSRGPITEKIQAAFFDIVNGRNPEY 306

Query: 301 ANWLTKI 307
           A+WLT++
Sbjct: 307 ASWLTRV 313


Lambda     K      H
   0.319    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 390
Number of extensions: 10
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 313
Length adjustment: 27
Effective length of query: 280
Effective length of database: 286
Effective search space:    80080
Effective search space used:    80080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_011799582.1 PNAP_RS00730 (branched-chain amino acid transaminase)
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.9461.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9461.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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