Alignments for a candidate for ilvA in Polaromonas naphthalenivorans CJ2

Align threonine ammonia-lyase (EC 4.3.1.19) (characterized)
to candidate WP_011800058.1 PNAP_RS03190 threonine ammonia-lyase, biosynthetic

Query= BRENDA::P04968
         (514 letters)



>NCBI__GCF_000015505.1:WP_011800058.1
          Length = 549

 Score =  504 bits (1299), Expect = e-147
 Identities = 264/519 (50%), Positives = 361/519 (69%), Gaps = 12/519 (2%)

Query: 5   QPLSGAPEGAEYLRAVLRAPVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLR 64
           +P +   + A+YL+ +L A VY+ A  + L+  + LS RL+N +L+KRED+QPV SFKLR
Sbjct: 30  KPSAKTLKPADYLKKILTARVYDVAVESALEPAKTLSLRLNNTVLLKREDQQPVFSFKLR 89

Query: 65  GAYAMMAGLTEEQKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGF 124
           GAY  MA LT  Q   GVI ASAGNHAQGVA S+ +LG +A+IVMPT T  +K+DAV+G+
Sbjct: 90  GAYNKMAHLTPAQLKKGVICASAGNHAQGVAMSAQKLGTRAVIVMPTTTPQLKIDAVKGW 149

Query: 125 GGEVLLHGANFDEAKAKAIELSQQQGFTWVPPFDHPMVIAGQGTLALELLQQ-----DAH 179
           GGEV+LHG ++ +A   ++ L ++QG T+V PFD P VIAGQGT+A+E+L+Q        
Sbjct: 150 GGEVVLHGDSYSDAYTHSVALQKEQGLTFVHPFDDPDVIAGQGTIAMEILRQLQTLGSRR 209

Query: 180 LDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFA 239
           LD VFV +GGGGL +GVA  IK + P+IKVI V+  DS  +  ++ A   V L  VGLF+
Sbjct: 210 LDAVFVAIGGGGLISGVANYIKAVRPEIKVIGVQMNDSDAMMQSVAAKKRVTLSDVGLFS 269

Query: 240 EGVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKY 299
           +G AVK +G+ETFR+ +E +D+ +TVD+DA+CAA+KD+F D R++ EP+GALA+A +K+Y
Sbjct: 270 DGTAVKLVGEETFRISRELVDEFMTVDTDAVCAAIKDIFVDTRSIVEPAGALAVAAIKQY 329

Query: 300 IALHNIRGERLAHILSGANVNFHGLRYVSERCELGEQREALLAVTIPEEKGSFLKFCQLL 359
           +A H  +GE  A IL GAN+NF  LR+V+ER E+GE+REAL AVTIPEE+GSF +FC L+
Sbjct: 330 VARHKTKGETYAAILCGANMNFDRLRFVAERAEVGEEREALFAVTIPEERGSFRRFCALI 389

Query: 360 -----GGRSVTEFNYRFADAKNACIFVGVRLSRGLEERKEILQMLNDGGYSVVDLSDDEM 414
                G RSVTEFNYR  D   A +FVG+  S   E  K I       G+  +DL+ DE+
Sbjct: 390 DKAPGGPRSVTEFNYRINDQAVAHVFVGLTTSAKGESSK-IAAQFTRHGFKALDLTHDEL 448

Query: 415 AKLHVRYMVGGRPSHPLQERLYSFEFPESPGALLRFLNTLGTYWNISLFHYRSHGTDYGR 474
           AK H+R+MVGG  +    ERL  F FPE PGAL++FL+++   WNI+LFHYR+ G DYGR
Sbjct: 449 AKEHIRHMVGGHSALSKDERLLRFIFPERPGALMKFLSSMRPDWNITLFHYRNQGADYGR 508

Query: 475 VLAAFELGDHEPD-FETRLNELGYDCHDETNNPAFRFFL 512
           +L   ++   +   F+  L+ LGY   +ET+NP +R FL
Sbjct: 509 ILVGLQVPKADSGAFQEFLDTLGYPHVEETDNPVYRLFL 547


Lambda     K      H
   0.321    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 683
Number of extensions: 24
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 549
Length adjustment: 35
Effective length of query: 479
Effective length of database: 514
Effective search space:   246206
Effective search space used:   246206
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)

Align candidate WP_011800058.1 PNAP_RS03190 (threonine ammonia-lyase, biosynthetic)
to HMM TIGR01124 (ilvA: threonine ammonia-lyase, biosynthetic (EC 4.3.1.19))

Software error:

../bin/blast/fastacmd -i /tmp/list.6591.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6591.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.