Alignments for a candidate for prs in Polaromonas naphthalenivorans CJ2

Align Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 (characterized)
to candidate WP_011800310.1 PNAP_RS04470 ribose-phosphate pyrophosphokinase

Query= SwissProt::P0A1V6
         (315 letters)



>NCBI__GCF_000015505.1:WP_011800310.1
          Length = 324

 Score =  402 bits (1034), Expect = e-117
 Identities = 204/313 (65%), Positives = 252/313 (80%), Gaps = 2/313 (0%)

Query: 2   PDMKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQINENVRGGDIFIIQSTCA 61
           PD  +F GNA P +A  I   L TSLG A VG+FSDGEV+V+I +NVR  D+F++QSTCA
Sbjct: 4   PDFLVFTGNANPSMAAEITQHLGTSLGVAHVGQFSDGEVTVEIQQNVRTRDVFVVQSTCA 63

Query: 62  PTNDNLMELVVMVDALRRASAGRITAVIPYFGYARQDRRVRSARVPITAKVVADFLSSVG 121
           PTNDNLMEL+VMVDAL+RASA RITAVIPYFGYARQDRR RSARVPITAKVVA+ L +VG
Sbjct: 64  PTNDNLMELLVMVDALKRASAERITAVIPYFGYARQDRRPRSARVPITAKVVANMLQAVG 123

Query: 122 VDRVLTVDLHAEQIQGFFDVPVDNVFGSPILLEDMLQLNLDNPIVVSPDIGGVVRARAIA 181
           V  VLT+DLHA+QIQGFFD+PVDN++ SPILL D+ Q    + +VVSPD+GGVVRARA+A
Sbjct: 124 VTSVLTMDLHADQIQGFFDIPVDNIYASPILLGDLRQRKYTDLMVVSPDVGGVVRARALA 183

Query: 182 KLLNDTDMAIIDKRRPRANVSQVMHIIGDVAGRDCVLVDDMIDTGGTLCKAAEALKERGA 241
           K L   DMAIIDKRRP+ANVS+VMH+IGD+ GR+CV++DDMIDT GTL KAAE LKERGA
Sbjct: 184 KQLG-CDMAIIDKRRPKANVSEVMHVIGDIEGRNCVIMDDMIDTAGTLVKAAEVLKERGA 242

Query: 242 KRVFAYATHPIFSGNAANNL-RNSVIDEVVVCDTIPLTDEIKALPNVRTLTLSGMLAEAI 300
           K+V+AY THPIFSG A + +     +DEVVV +TIPL    +A   +R L+++ ++AE I
Sbjct: 243 KKVYAYCTHPIFSGPAIDRITHGDALDEVVVTNTIPLNPNAQACKKIRQLSVAPLIAETI 302

Query: 301 RRISNEESISAMF 313
           +RI+  ES+ ++F
Sbjct: 303 QRIAKGESVMSLF 315


Lambda     K      H
   0.322    0.137    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 333
Number of extensions: 10
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 324
Length adjustment: 28
Effective length of query: 287
Effective length of database: 296
Effective search space:    84952
Effective search space used:    84952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)

Align candidate WP_011800310.1 PNAP_RS04470 (ribose-phosphate pyrophosphokinase)
to HMM TIGR01251 (prs: ribose-phosphate diphosphokinase (EC 2.7.6.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.7425.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7425.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.