Align acetohydroxyacid synthase subunit B (EC 2.2.1.6) (characterized)
to candidate WP_011801116.1 PNAP_RS08580 acetolactate synthase 3 catalytic subunit
Query= metacyc::MONOMER-18810 (585 letters) >NCBI__GCF_000015505.1:WP_011801116.1 Length = 592 Score = 893 bits (2307), Expect = 0.0 Identities = 437/580 (75%), Positives = 497/580 (85%), Gaps = 3/580 (0%) Query: 9 ADSNSSAAPEMIGAEILVHALAEEGVEYVWGYPGGAVLYIYDELHKQTKFEHILVRHEQA 68 A S + ++ GAEILV AL EGV+Y+WGYPGGAVL+IYD +KQ +H+LVRHEQA Sbjct: 13 ATSAQTNPQDLRGAEILVKALQAEGVKYIWGYPGGAVLHIYDAFYKQDSIQHVLVRHEQA 72 Query: 69 AVHAADGYARATGKVGVALVTSGPGVTNAVTGIATAYLDSIPMVVITGNVPTHAIGQDAF 128 AVHAADGYARATG VGVALVTSGPG+TNAVTGIATAY+DSIPMV+I+G VPT AIG DAF Sbjct: 73 AVHAADGYARATGDVGVALVTSGPGLTNAVTGIATAYMDSIPMVIISGQVPTAAIGLDAF 132 Query: 129 QECDTVGITRPIVKHNFLVKDVRDLAATIKKAFFIAATGRPGPVVVDIPKDVSRNACKYE 188 QECDTVGITRPIVKHNFLVKDVRD+A T+KKAF IA TGRPGPVVVD+PKDVS N Y Sbjct: 133 QECDTVGITRPIVKHNFLVKDVRDMAETMKKAFHIARTGRPGPVVVDVPKDVSFNKTLYT 192 Query: 189 -YPKSIDMRSYNPVNKGHSGQIRKAVALLQGAERPYIYTGGGVVLANASDELRQLAALTG 247 YPKS++MRSYNPV KGH+GQIRKA+ LL A+RPYIYTGGGV+L+NAS ELR L + G Sbjct: 193 GYPKSVEMRSYNPVRKGHAGQIRKALHLLMAAKRPYIYTGGGVLLSNASQELRTLVDMLG 252 Query: 248 HPVTNTLMGLGAFPGTSKQFVGMLGMHGTYEANMAMQNCDVLIAIGARFDDRVIGNPAHF 307 +P T+TLMGLGA+P + K+F+GMLGMHGT EAN AMQNCDVL+A+GARFDDRVIGNP HF Sbjct: 253 YPCTHTLMGLGAYPASDKKFLGMLGMHGTLEANNAMQNCDVLLAVGARFDDRVIGNPKHF 312 Query: 308 TSQARKIIHIDIDPSSISKRVKVDIPIVGNVKDVLQELIAQIKASDIKPKREALAKWWEQ 367 RKIIHIDIDPSSISKRVKVDIPIVG+VKDVL ELIA I+ S +KP +AL WW Sbjct: 313 AQNERKIIHIDIDPSSISKRVKVDIPIVGDVKDVLTELIAMIRESGLKPDADALGGWWST 372 Query: 368 IEQWRSVDCLKYDRSS-EIIKPQYVVEKIWELTK-GDAFICSDVGQHQMWAAQFYKFDEP 425 I++WR DC+KY + ++IKPQYVVE +W +TK D +I SDVGQHQMWAAQ+YKFDEP Sbjct: 373 IDEWRKRDCMKYSLGTGDVIKPQYVVETLWNMTKDADTYITSDVGQHQMWAAQYYKFDEP 432 Query: 426 RRWINSGGLGTMGVGLPYAMGIKKAFPEKEVVTITGEGSIQMCIQELSTCLQYDTPVKIC 485 RRWINSGGLGTMGVG+PYAMGIK A P+ EV ITGEGS+QMCIQELSTCLQY+TP+KI Sbjct: 433 RRWINSGGLGTMGVGIPYAMGIKLAKPDSEVFCITGEGSVQMCIQELSTCLQYNTPIKIV 492 Query: 486 SLNNGYLGMVRQWQEIEYDNRYSHSYMDALPDFVKLAEAYGHVGMRVEKTSDVEPALREA 545 SLNN YLGMVRQWQEIEY RYS SYMDALP+FVKLAEAYGHVGM +EK DVEPALREA Sbjct: 493 SLNNRYLGMVRQWQEIEYAGRYSSSYMDALPNFVKLAEAYGHVGMLIEKPQDVEPALREA 552 Query: 546 FRLKDRTVFLDFQTDPTENVWPMVQAGKGISEMLLGAEDL 585 +LKDRTVF+DF+TDPTENV+PMV+AGKGI+EMLLG+EDL Sbjct: 553 RKLKDRTVFMDFRTDPTENVFPMVKAGKGITEMLLGSEDL 592 Lambda K H 0.319 0.135 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1116 Number of extensions: 31 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 585 Length of database: 592 Length adjustment: 37 Effective length of query: 548 Effective length of database: 555 Effective search space: 304140 Effective search space used: 304140 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 53 (25.0 bits)
Align candidate WP_011801116.1 PNAP_RS08580 (acetolactate synthase 3 catalytic subunit)
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))
../bin/blast/fastacmd -i /tmp/list.26677.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26677.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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