Align acetohydroxyacid synthase subunit B (EC 2.2.1.6) (characterized)
to candidate WP_011801116.1 PNAP_RS08580 acetolactate synthase 3 catalytic subunit
Query= metacyc::MONOMER-18810
(585 letters)
>NCBI__GCF_000015505.1:WP_011801116.1
Length = 592
Score = 893 bits (2307), Expect = 0.0
Identities = 437/580 (75%), Positives = 497/580 (85%), Gaps = 3/580 (0%)
Query: 9 ADSNSSAAPEMIGAEILVHALAEEGVEYVWGYPGGAVLYIYDELHKQTKFEHILVRHEQA 68
A S + ++ GAEILV AL EGV+Y+WGYPGGAVL+IYD +KQ +H+LVRHEQA
Sbjct: 13 ATSAQTNPQDLRGAEILVKALQAEGVKYIWGYPGGAVLHIYDAFYKQDSIQHVLVRHEQA 72
Query: 69 AVHAADGYARATGKVGVALVTSGPGVTNAVTGIATAYLDSIPMVVITGNVPTHAIGQDAF 128
AVHAADGYARATG VGVALVTSGPG+TNAVTGIATAY+DSIPMV+I+G VPT AIG DAF
Sbjct: 73 AVHAADGYARATGDVGVALVTSGPGLTNAVTGIATAYMDSIPMVIISGQVPTAAIGLDAF 132
Query: 129 QECDTVGITRPIVKHNFLVKDVRDLAATIKKAFFIAATGRPGPVVVDIPKDVSRNACKYE 188
QECDTVGITRPIVKHNFLVKDVRD+A T+KKAF IA TGRPGPVVVD+PKDVS N Y
Sbjct: 133 QECDTVGITRPIVKHNFLVKDVRDMAETMKKAFHIARTGRPGPVVVDVPKDVSFNKTLYT 192
Query: 189 -YPKSIDMRSYNPVNKGHSGQIRKAVALLQGAERPYIYTGGGVVLANASDELRQLAALTG 247
YPKS++MRSYNPV KGH+GQIRKA+ LL A+RPYIYTGGGV+L+NAS ELR L + G
Sbjct: 193 GYPKSVEMRSYNPVRKGHAGQIRKALHLLMAAKRPYIYTGGGVLLSNASQELRTLVDMLG 252
Query: 248 HPVTNTLMGLGAFPGTSKQFVGMLGMHGTYEANMAMQNCDVLIAIGARFDDRVIGNPAHF 307
+P T+TLMGLGA+P + K+F+GMLGMHGT EAN AMQNCDVL+A+GARFDDRVIGNP HF
Sbjct: 253 YPCTHTLMGLGAYPASDKKFLGMLGMHGTLEANNAMQNCDVLLAVGARFDDRVIGNPKHF 312
Query: 308 TSQARKIIHIDIDPSSISKRVKVDIPIVGNVKDVLQELIAQIKASDIKPKREALAKWWEQ 367
RKIIHIDIDPSSISKRVKVDIPIVG+VKDVL ELIA I+ S +KP +AL WW
Sbjct: 313 AQNERKIIHIDIDPSSISKRVKVDIPIVGDVKDVLTELIAMIRESGLKPDADALGGWWST 372
Query: 368 IEQWRSVDCLKYDRSS-EIIKPQYVVEKIWELTK-GDAFICSDVGQHQMWAAQFYKFDEP 425
I++WR DC+KY + ++IKPQYVVE +W +TK D +I SDVGQHQMWAAQ+YKFDEP
Sbjct: 373 IDEWRKRDCMKYSLGTGDVIKPQYVVETLWNMTKDADTYITSDVGQHQMWAAQYYKFDEP 432
Query: 426 RRWINSGGLGTMGVGLPYAMGIKKAFPEKEVVTITGEGSIQMCIQELSTCLQYDTPVKIC 485
RRWINSGGLGTMGVG+PYAMGIK A P+ EV ITGEGS+QMCIQELSTCLQY+TP+KI
Sbjct: 433 RRWINSGGLGTMGVGIPYAMGIKLAKPDSEVFCITGEGSVQMCIQELSTCLQYNTPIKIV 492
Query: 486 SLNNGYLGMVRQWQEIEYDNRYSHSYMDALPDFVKLAEAYGHVGMRVEKTSDVEPALREA 545
SLNN YLGMVRQWQEIEY RYS SYMDALP+FVKLAEAYGHVGM +EK DVEPALREA
Sbjct: 493 SLNNRYLGMVRQWQEIEYAGRYSSSYMDALPNFVKLAEAYGHVGMLIEKPQDVEPALREA 552
Query: 546 FRLKDRTVFLDFQTDPTENVWPMVQAGKGISEMLLGAEDL 585
+LKDRTVF+DF+TDPTENV+PMV+AGKGI+EMLLG+EDL
Sbjct: 553 RKLKDRTVFMDFRTDPTENVFPMVKAGKGITEMLLGSEDL 592
Lambda K H
0.319 0.135 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1116
Number of extensions: 31
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 592
Length adjustment: 37
Effective length of query: 548
Effective length of database: 555
Effective search space: 304140
Effective search space used: 304140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)
Align candidate WP_011801116.1 PNAP_RS08580 (acetolactate synthase 3 catalytic subunit)
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))
../bin/blast/fastacmd -i /tmp/list.26249.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26249.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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