Alignments for a candidate for cmutase in Halorhodospira halophila SL1

Align Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 (characterized)
to candidate WP_011813377.1 HHAL_RS13210 prephenate dehydratase

Query= SwissProt::P27603
         (365 letters)



>NCBI__GCF_000015585.1:WP_011813377.1
          Length = 362

 Score =  373 bits (958), Expect = e-108
 Identities = 191/361 (52%), Positives = 251/361 (69%), Gaps = 5/361 (1%)

Query: 5   DQLKALRVRIDSLDERILDLISERARCAQEVARVKTASWPKAEEAVFYRPEREAWVLKHI 64
           D L ALR RID +D++IL+L+SERAR A+EVAR K     + E    YRPEREA +L+ +
Sbjct: 6   DDLAALRQRIDGIDDQILELVSERARLAEEVARAKAR---RGEALKVYRPEREAEILRRL 62

Query: 65  MELNKGPLDNEEMARLFREIMSSCLALEQPLRVAYLGPEGTFSQAAALKHFGHSVISKPM 124
            E N+GPL  E++  LFRE+MS+C AL+QPL VA+LGP+GTF++ AA KHFGH     P 
Sbjct: 63  TEHNRGPLTREQVTVLFREVMSACRALQQPLTVAFLGPQGTFTEEAASKHFGHDAGMSPQ 122

Query: 125 AAIDEVFREVVAGAVNFGVVPVENSTEGAVNHTLDSFLEHDIVICGEVELRIHHHLLVGE 184
           A I  VFREV +GA ++GVVPVENS+EG V+HTLD FL+ ++ I GEVELRI HH L   
Sbjct: 123 ATIGGVFREVESGAAHYGVVPVENSSEGVVSHTLDRFLDSELAIVGEVELRI-HHALASH 181

Query: 185 TTKTDRITRIYSHAQSLAQCRKWLDAHYPNVERVAVSSNADAAKRVKSEWNSAAIAGDMA 244
                 I R+YSH Q L+QCR WL+ H P  ER  VSS A+AA+    E ++AAIA + A
Sbjct: 182 AGGLTSIDRVYSHQQGLSQCRAWLETHLPQAERHPVSSTAEAARLAALEPSAAAIASEAA 241

Query: 245 AQLYGLSKLAEKIEDRPVNSTRFLIIGSQEVPPTGDDKTSIIVSMRNKPGALHELLMPFH 304
           A+ YG+  L E+IED   N+TRFL++G Q  PP+G DKTS++VS  N+ G L +LL P  
Sbjct: 242 AERYGVPLLQERIEDYHGNTTRFLVLGYQSPPPSGHDKTSLVVSSANRSGLLFQLLEPLA 301

Query: 305 SNGIDLTRIETRPSRS-GKWTYVFFIDCMGHHQDPLIKNVLEKIGHEAVALKVLGSYPKA 363
            NGID+TRIE+RP+R  G W YVFFID +GH +D  ++  L ++   A   ++LGSYP+A
Sbjct: 302 RNGIDMTRIESRPARQRGVWEYVFFIDILGHAEDESLRGPLAEMRERASLFRILGSYPRA 361

Query: 364 V 364
           +
Sbjct: 362 I 362


Lambda     K      H
   0.319    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 382
Number of extensions: 13
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 362
Length adjustment: 29
Effective length of query: 336
Effective length of database: 333
Effective search space:   111888
Effective search space used:   111888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_011813377.1 HHAL_RS13210 (prephenate dehydratase)
to HMM TIGR01807 (pheA: chorismate mutase (EC 5.4.99.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.16096.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16096.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.