Alignments for a candidate for argI in Halorhodospira halophila SL1

Align Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 (characterized)
to candidate WP_011813531.1 HHAL_RS03735 ornithine carbamoyltransferase

Query= SwissProt::P11724
         (305 letters)



>NCBI__GCF_000015585.1:WP_011813531.1
          Length = 300

 Score =  382 bits (982), Expect = e-111
 Identities = 188/297 (63%), Positives = 228/297 (76%)

Query: 3   VRHFLSFMDYSPEELIGLIRRGSELKDLRNRGVLYEPLKSRVLGMVFEKASTRTRLSFEA 62
           +RHFL+  D S +E+  L+RR +EL+D+   G L++PL+ RVLGMVFEK+STRTR+SFEA
Sbjct: 1   MRHFLTLRDCSVDEIHQLLRRATELRDMHRAGHLHQPLQGRVLGMVFEKSSTRTRVSFEA 60

Query: 63  GMIQLGGQAIFLSPRDTQLGRGEPIGDSARVMSRMLDGVMIRTFAHATLTEFAAHSKVPV 122
           GM QLGG A+FLSPRDTQLGRGEP+ D+ARV+SRM+D VMIRTF H  L  FA HS  PV
Sbjct: 61  GMAQLGGHALFLSPRDTQLGRGEPVEDTARVVSRMVDAVMIRTFGHDMLERFAGHSAAPV 120

Query: 123 INGLSDDLHPCQLLADMQTFHEHRGSIQGKTVAWIGDGNNMCNSYIEAALKFDFQLRVAC 182
           INGLSD  HPCQLLAD+QTF EHRG I  + VAWIGDGNNMC+S+IEAA    F L +A 
Sbjct: 121 INGLSDLCHPCQLLADLQTFTEHRGPITDRRVAWIGDGNNMCHSWIEAAGLLGFDLHIAA 180

Query: 183 PEGYEPKAEFVALAGDRLRVVRDPREAVAGAHLVSTDVWASMGQEDEAAARIALFRPYQV 242
           P GY P+A+ +AL GDR++V  D   A  GA LV+TDVWASMGQE E AAR   FR + V
Sbjct: 181 PPGYRPEADILALGGDRVQVFDDAYAAAEGADLVTTDVWASMGQESEQAAREEAFRGFCV 240

Query: 243 NAALLDGAADDVLFMHCLPAHRGEEISEELLDDPRSVAWDQAENRLHAQKALLELLI 299
             +L++ A +  LFMHCLPAHRGEE+   +L+ P+SV WD+AENRLHAQKALLE L+
Sbjct: 241 TESLMECAGEQALFMHCLPAHRGEEVEAAVLEGPQSVVWDEAENRLHAQKALLEFLM 297


Lambda     K      H
   0.322    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 309
Number of extensions: 12
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 300
Length adjustment: 27
Effective length of query: 278
Effective length of database: 273
Effective search space:    75894
Effective search space used:    75894
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)

Align candidate WP_011813531.1 HHAL_RS03735 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.26916.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26916.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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