Alignments for a candidate for asp-kinase in Halorhodospira halophila SL1

Align Aspartate kinase; Aspartokinase; EC 2.7.2.4 (characterized)
to candidate WP_011814438.1 HHAL_RS08325 aspartate kinase

Query= SwissProt::Q88EI9
         (411 letters)



>NCBI__GCF_000015585.1:WP_011814438.1
          Length = 416

 Score =  566 bits (1458), Expect = e-166
 Identities = 288/404 (71%), Positives = 346/404 (85%), Gaps = 1/404 (0%)

Query: 1   MALIVQKFGGTSVGSIERIEQVAEKVKKHREAGDDLVVVLSAMSGETNRLIDLAKQITDQ 60
           M L+V+KFGGTSVG+ ERI+ VAE+VK  REAGDD+VVV+SAMSGETNRL++LA+ I   
Sbjct: 1   MGLVVKKFGGTSVGTTERIQAVAEQVKASREAGDDVVVVVSAMSGETNRLVELAESIHPN 60

Query: 61  PVPRELDVIVSTGEQVTIALLTMALIKRGVPAVSYTGNQVRILTDSSHNKARILQIDDQK 120
           P  RE+DV++STGEQVTIALLTMAL +   PA  YTG QVRILTDSS ++ARIL ID + 
Sbjct: 61  PPAREVDVLLSTGEQVTIALLTMALEQIDCPARCYTGAQVRILTDSSFSRARILDIDAEP 120

Query: 121 IRADLKEGRVVVVAGFQGVDEHGSITTLGRGGSDTTGVALAAALKADECQIYTDVDGVYT 180
           ++ DL+ GRVVVVAGFQGVDE G++TTLGRGGSDTT VALAAAL+A ECQIYTDVDGVYT
Sbjct: 121 LQEDLQRGRVVVVAGFQGVDEEGALTTLGRGGSDTTAVALAAALEASECQIYTDVDGVYT 180

Query: 181 TDPRVVPQARRLEKITFEEMLEMASLGSKVLQIRSVEFAGKYNVPLRVLHSFKEGPGTLI 240
           TDPRVVP+ARRL++IT +EMLE++SLGSKVLQIR+VEFAGKY VPLRVL SF+EGPGTLI
Sbjct: 181 TDPRVVPEARRLDRITVDEMLELSSLGSKVLQIRAVEFAGKYRVPLRVLSSFEEGPGTLI 240

Query: 241 TIDEEESMEQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISASNIEVDMIVQNVAH 300
           T  EEE ME+P+ISGIAFNRDEAK+++ GVPDTPG+A KILG ++ +NIEVDMI+QN++ 
Sbjct: 241 TY-EEEGMEEPLISGIAFNRDEAKISVIGVPDTPGIAAKILGAVAEANIEVDMIIQNISQ 299

Query: 301 DNTTDFTFTVHRNEYEKAQSVLENTAREIGAREVIGDTKIAKVSIVGVGMRSHAGVASCM 360
              TDFTFTVH+ +Y+    ++ + A ++GAREV GD KI K+S+VGVGMRSHAGVA+ M
Sbjct: 300 QGLTDFTFTVHKRDYQATLDLVRDNAEQLGAREVYGDDKIVKLSLVGVGMRSHAGVANTM 359

Query: 361 FEALAKESINIQMISTSEIKVSVVLEEKYLELAVRALHTAFDLD 404
           F AL+ E INIQMISTSEIK+SVV+EEKYLEL VRALH AF+LD
Sbjct: 360 FRALSNEGINIQMISTSEIKISVVVEEKYLELGVRALHKAFELD 403


Lambda     K      H
   0.316    0.133    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 547
Number of extensions: 19
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 416
Length adjustment: 31
Effective length of query: 380
Effective length of database: 385
Effective search space:   146300
Effective search space used:   146300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_011814438.1 HHAL_RS08325 (aspartate kinase)
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.31182.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.31182.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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