Align Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 (characterized)
to candidate WP_011840114.1 RSPH17029_RS00095 phosphoserine phosphatase SerB
Query= SwissProt::Q12A06 (236 letters) >NCBI__GCF_000015985.1:WP_011840114.1 Length = 291 Score = 173 bits (439), Expect = 3e-48 Identities = 97/208 (46%), Positives = 128/208 (61%), Gaps = 5/208 (2%) Query: 25 KLIAFDMDSTLINIECVDEIADAAGRKAEVAAITEAAMRGEISDYKESLRQRVALLKGVS 84 KL+ DMDST+I EC+DE+AD AG VA IT AM GE++ ++ +LR+RV LLKG+S Sbjct: 77 KLLLADMDSTMIRQECIDELADEAGVGEYVAGITRRAMNGELN-FESALRERVGLLKGLS 135 Query: 85 VASMDEVYRTRLRLNPGAARLVQACKDAGLKVLLVSGGFTFFTDRIRDELGIDYTRSNVL 144 + +D V+ TR++ PG LVQ K G + LVSGGFT FT+++ LG D R+N+L Sbjct: 136 ASVVDRVFETRIQYMPGGRALVQTMKAHGARAALVSGGFTAFTEKVAAGLGFDEHRANIL 195 Query: 145 ETTDGLLTGRMVDQPWGDICDGEEKRKMLLETCGQLGISPRQAIAMGDGANDLPMMGEAG 204 +G LTG + + I E K L E C +LGI A+A+GDGANDL M+ AG Sbjct: 196 HVAEGALTGTVAE----PILGREAKLAALEEICARLGIEVADAMAVGDGANDLGMLKRAG 251 Query: 205 LSVAYHAKPRVREQAMVAINEGGLDRLL 232 VA HAKP V + + IN G L LL Sbjct: 252 AGVALHAKPVVAAECDIRINHGDLTSLL 279 Lambda K H 0.319 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 193 Number of extensions: 6 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 236 Length of database: 291 Length adjustment: 25 Effective length of query: 211 Effective length of database: 266 Effective search space: 56126 Effective search space used: 56126 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 47 (22.7 bits)
Align candidate WP_011840114.1 RSPH17029_RS00095 (phosphoserine phosphatase SerB)
to HMM TIGR00338 (serB: phosphoserine phosphatase SerB (EC 3.1.3.3))
../bin/blast/fastacmd -i /tmp/list.9686.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.9686.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.