Alignments for a candidate for serB in Cereibacter sphaeroides ATCC 17029

Align Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 (characterized)
to candidate WP_011840114.1 RSPH17029_RS00095 phosphoserine phosphatase SerB

Query= SwissProt::Q12A06
         (236 letters)



>NCBI__GCF_000015985.1:WP_011840114.1
          Length = 291

 Score =  173 bits (439), Expect = 3e-48
 Identities = 97/208 (46%), Positives = 128/208 (61%), Gaps = 5/208 (2%)

Query: 25  KLIAFDMDSTLINIECVDEIADAAGRKAEVAAITEAAMRGEISDYKESLRQRVALLKGVS 84
           KL+  DMDST+I  EC+DE+AD AG    VA IT  AM GE++ ++ +LR+RV LLKG+S
Sbjct: 77  KLLLADMDSTMIRQECIDELADEAGVGEYVAGITRRAMNGELN-FESALRERVGLLKGLS 135

Query: 85  VASMDEVYRTRLRLNPGAARLVQACKDAGLKVLLVSGGFTFFTDRIRDELGIDYTRSNVL 144
            + +D V+ TR++  PG   LVQ  K  G +  LVSGGFT FT+++   LG D  R+N+L
Sbjct: 136 ASVVDRVFETRIQYMPGGRALVQTMKAHGARAALVSGGFTAFTEKVAAGLGFDEHRANIL 195

Query: 145 ETTDGLLTGRMVDQPWGDICDGEEKRKMLLETCGQLGISPRQAIAMGDGANDLPMMGEAG 204
              +G LTG + +     I   E K   L E C +LGI    A+A+GDGANDL M+  AG
Sbjct: 196 HVAEGALTGTVAE----PILGREAKLAALEEICARLGIEVADAMAVGDGANDLGMLKRAG 251

Query: 205 LSVAYHAKPRVREQAMVAINEGGLDRLL 232
             VA HAKP V  +  + IN G L  LL
Sbjct: 252 AGVALHAKPVVAAECDIRINHGDLTSLL 279


Lambda     K      H
   0.319    0.136    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 193
Number of extensions: 6
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 291
Length adjustment: 25
Effective length of query: 211
Effective length of database: 266
Effective search space:    56126
Effective search space used:    56126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)

Align candidate WP_011840114.1 RSPH17029_RS00095 (phosphoserine phosphatase SerB)
to HMM TIGR00338 (serB: phosphoserine phosphatase SerB (EC 3.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.25452.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.25452.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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