Alignments for a candidate for asd in Cereibacter sphaeroides ATCC 17029

Align Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11 (characterized)
to candidate WP_011840132.1 RSPH17029_RS00225 aspartate-semialdehyde dehydrogenase

Query= SwissProt::P23247
         (337 letters)



>NCBI__GCF_000015985.1:WP_011840132.1
          Length = 340

 Score =  314 bits (805), Expect = 2e-90
 Identities = 168/332 (50%), Positives = 229/332 (68%), Gaps = 6/332 (1%)

Query: 5   FNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDW 64
           + V + GATG VG  ML +L EREFPV+E+  LAS +S G    F  KT+  ++++ FD+
Sbjct: 3   YRVVVAGATGNVGREMLNILAEREFPVEEIAALASRKSLGTEVSFGDKTLTTKDLDTFDF 62

Query: 65  SQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFRNR 124
           +   IALF+ G + +  +AP AA AG VVIDN+S +RYD  +PL+VPEVN +AI  ++ +
Sbjct: 63  TGWDIALFAVGSDATKIYAPKAAAAGCVVIDNSSLYRYDPQVPLIVPEVNADAIEGYKAK 122

Query: 125 NIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKL-LNGY 183
           NIIANPNCST QM+VALKP++D   I+R+ V+TYQSVSGAGKAGIDEL  QT  + + G 
Sbjct: 123 NIIANPNCSTAQMVVALKPLHDRARIKRVVVSTYQSVSGAGKAGIDELWNQTKGIYVPGQ 182

Query: 184 PAETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVPVFY 243
             E + F++QIAFN IP ID FM++G TKEE KMV ET+KI  DP + V  TCVRVPVF 
Sbjct: 183 EVEPSKFTKQIAFNVIPHIDSFMEDGSTKEEWKMVAETKKIL-DPKVKVTATCVRVPVFV 241

Query: 244 GHAEAVHVETRAPIDAEQVMDMLEQTDG---IELFRGADFPTQVRDAGGKDHVLVGRVRN 300
           GH+EA+++E    +D E+  D+L +  G   ++      + T V +  G+    + R+R 
Sbjct: 242 GHSEAINIEFEDFLDEEEARDILREAPGVLVVDKREAGGYITPV-ECVGEYATYISRIRQ 300

Query: 301 DISHHSGINLWVVADNVRKGAATNAVQIAELL 332
           D +  +G+NLW V+DN+RKGAA NAVQIAE+L
Sbjct: 301 DSTLDNGLNLWCVSDNLRKGAALNAVQIAEVL 332


Lambda     K      H
   0.319    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 334
Number of extensions: 19
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 340
Length adjustment: 28
Effective length of query: 309
Effective length of database: 312
Effective search space:    96408
Effective search space used:    96408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_011840132.1 RSPH17029_RS00225 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.15211.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.15211.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.