Alignments for a candidate for deoB in Cereibacter sphaeroides ATCC 17029

Align Phosphopentomutase (EC 5.4.2.7) (characterized)
to candidate WP_011840267.1 RSPH17029_RS01270 phosphopentomutase

Query= reanno::Dino:3607415
         (399 letters)



>NCBI__GCF_000015985.1:WP_011840267.1
          Length = 398

 Score =  576 bits (1484), Expect = e-169
 Identities = 288/398 (72%), Positives = 318/398 (79%), Gaps = 2/398 (0%)

Query: 1   MTRAFLIVMDSVGCGGAPDAADFGDEGANTLAHIAQACAAGRADAGRSGPLRMPVLDGLG 60
           M RAFLIVMDSVGCGGAPDAA FGD G+NTL HIA+ACAAGRA+ GRSGPLR+PVLD LG
Sbjct: 1   MPRAFLIVMDSVGCGGAPDAAAFGDAGSNTLGHIAEACAAGRAEEGRSGPLRLPVLDALG 60

Query: 61  LGAAIRLASGAETPGLAATPTGLWGAATEVSRGKDTPTGHWELAGVPVPWEWTTFPDTDP 120
           LG AI LASG   PGL A P+G WGAATEVS+GKDTP+GHWELAGVPVPW+W  FPD  P
Sbjct: 61  LGRAIELASGLTAPGLGAEPSGRWGAATEVSKGKDTPSGHWELAGVPVPWDWHYFPDRCP 120

Query: 121 AFPPDLLAEMARAAGTEGTLCNTHASGTEVIERFGAEHLRTGWPICYTSVDSVLQIAAHE 180
           AFP DL AE+ R AGTEG L N HASGT VIE  GAEHLRTGWPICYTS DSVLQIAAHE
Sbjct: 121 AFPDDLTAEICRRAGTEGILGNRHASGTAVIEELGAEHLRTGWPICYTSADSVLQIAAHE 180

Query: 181 EAFGLDRLLDVCETLAPRLHAMKVGRVIARPFLGSEATGFARTQNRRDFAIAPPAPTLCD 240
           EAFGLDRLL +C  LAP LHAM+VGRVIARPF G+  + FART NRRD+AIAPPAPTL D
Sbjct: 181 EAFGLDRLLALCAGLAPTLHAMRVGRVIARPFTGAPGS-FARTPNRRDYAIAPPAPTLLD 239

Query: 241 RVQAAGRRVHAIGKIKDIFSGRGIDTVAKG-SDAALMEALIAAGQVAEEGSLTFANFVEF 299
              AAGR  HAIGKI DIFS RGI  + KG  DAAL + L A    AEEG+LTFANFVEF
Sbjct: 240 IAAAAGRATHAIGKIGDIFSHRGIGQLHKGRDDAALFDRLDALADTAEEGALTFANFVEF 299

Query: 300 DSLYGHRRDVAGYARALEWFDAQLPRFLATLRPGDLAIFTADHGNDPTWHGTEHTRERVP 359
           DSLYGHRRDV+GYARALEWFD +   FLA LRPGD+A+FTADHGNDPT+ GTEHTRERVP
Sbjct: 300 DSLYGHRRDVSGYARALEWFDGRAGAFLARLRPGDMALFTADHGNDPTFRGTEHTRERVP 359

Query: 360 VVGYGVGVHEVGIVGFRDVGATIGAHLGVEMFDMGKAM 397
           V+  G G   +G+  + DV AT+ AHLG+     G+A+
Sbjct: 360 VLIAGTGAGPLGLCAYADVAATVAAHLGLSNPGPGRAL 397


Lambda     K      H
   0.321    0.137    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 639
Number of extensions: 29
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 398
Length adjustment: 31
Effective length of query: 368
Effective length of database: 367
Effective search space:   135056
Effective search space used:   135056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)

Align candidate WP_011840267.1 RSPH17029_RS01270 (phosphopentomutase)
to HMM TIGR01696 (deoB: phosphopentomutase (EC 5.4.2.7))

Software error:

../bin/blast/fastacmd -i /tmp/list.22363.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.22363.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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