Alignments for a candidate for 1pfk in Cereibacter sphaeroides ATCC 17029

Align 1-phosphofructokinase (EC 2.7.1.56) (characterized)
to candidate WP_011840355.1 RSPH17029_RS02210 1-phosphofructokinase

Query= reanno::psRCH2:GFF3290
         (312 letters)



>NCBI__GCF_000015985.1:WP_011840355.1
          Length = 328

 Score =  215 bits (547), Expect = 1e-60
 Identities = 134/307 (43%), Positives = 174/307 (56%), Gaps = 3/307 (0%)

Query: 1   MARVLTVTLNPALDLTVQLPALRLGEVNRSDSLQVHAAGKGLNVAQVLADLGHQLTVTGF 60
           M+RV TVTLNPA+D TV LP L +GEVNR+ +++    GKG+NVA VLAD G  +   G 
Sbjct: 1   MSRVHTVTLNPAIDQTVSLPRLAVGEVNRATAVRHDPGGKGINVASVLADWGVSVAAHGL 60

Query: 61  LGEGNPQAFEQLFSARGFTDEFVRVAGETRSNLKLAEADGRVTDINGPGLAVSEAQRAEL 120
           LG  N   FE LF+ +   D  +RVAGETR+N+K+ E DGR TD+N PG    E   A L
Sbjct: 61  LGRANAAPFEALFAQKSIADRMLRVAGETRTNVKILEEDGRTTDLNLPGFPADEGHLAAL 120

Query: 121 LARLKRLVPAHELVVVAGSLPRGIDSQWFVQLLNSLKALGVRVALDTSGAALRDGLAT-- 178
              L   V A ELVV++GS P G+ +    +L   ++  G RV  D SGA L + LA   
Sbjct: 121 AEGLGS-VAAGELVVISGSQPAGLPASATARLAARVQERGARVLCDVSGAPLAEVLAAPL 179

Query: 179 RPWLIKPNEEELAEARGIELSGSSALAAEAQRLQEEGIEHVVVSQGADGVSWFSPGAALH 238
            P  IKPN  EL    G  L+  + LAA A  L   GI  VVVS G +G  + S   A+ 
Sbjct: 180 LPDAIKPNRHELEGWVGRSLADRADLAAAASALAARGIALVVVSLGTEGALFVSSDGAVV 239

Query: 239 ASPPKVRVVSTVGAGDSLLAGMLHGLLEGWPAERTLTHATAIAAQAVGQVGFGITDTAQL 298
           A P ++   STVGAGD+++AG+   L+EG P   T   ATA AA  +   G  +    Q+
Sbjct: 240 ARPVQLSRGSTVGAGDAMVAGLASALVEGLPLRATAARATAFAAAKLQNPGPHLPGVDQV 299

Query: 299 AELQAAV 305
             L+A V
Sbjct: 300 RALEARV 306


Lambda     K      H
   0.316    0.132    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 279
Number of extensions: 11
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 328
Length adjustment: 28
Effective length of query: 284
Effective length of database: 300
Effective search space:    85200
Effective search space used:    85200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)

Align candidate WP_011840355.1 RSPH17029_RS02210 (1-phosphofructokinase)
to HMM TIGR03828 (pfkB: 1-phosphofructokinase (EC 2.7.1.56))

Software error:

../bin/blast/fastacmd -i /tmp/list.23193.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.23193.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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