Align Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 (characterized)
to candidate WP_011840366.1 RSPH17029_RS02300 aconitate hydratase AcnA
Query= SwissProt::P70920
(906 letters)
>NCBI__GCF_000015985.1:WP_011840366.1
Length = 894
Score = 1147 bits (2966), Expect = 0.0
Identities = 582/903 (64%), Positives = 695/903 (76%), Gaps = 18/903 (1%)
Query: 5 DSFKCKKTLKVGAKTYVYYSLPTAEKNGLKGISKLPYSMKVLLENLLRNEDGRSVKKADI 64
DS K +KTL VG +Y YYS+P AE+ GL ++LP ++KV+LEN+LR EDG++V DI
Sbjct: 8 DSQKTRKTLSVGGSSYAYYSIPAAEEAGLGQFARLPAALKVVLENMLRFEDGKTVSVDDI 67
Query: 65 VAVSKWLRKKSLE-HEIAFRPARVLMQDFTGVPAVVDLAAMRNAMQKLGGDAEKINPLVP 123
A S+W EIA+RPARVLMQDFTGVPAVVDLAAMR+ + LGGDA+KINPL P
Sbjct: 68 RAFSEWGANGGRNPREIAYRPARVLMQDFTGVPAVVDLAAMRDGILGLGGDAQKINPLNP 127
Query: 124 VDLVIDHSVIVNFFGDNKAFAKNVTEEYKQNQERYEFLKWGQAAFSNFSVVPPGTGICHQ 183
VDLVIDHSV+++ FG+ +AF NV EY++N ERY FLKWGQ AF+NF VVPPGTGICHQ
Sbjct: 128 VDLVIDHSVMIDEFGNPRAFQMNVDREYERNMERYTFLKWGQKAFNNFRVVPPGTGICHQ 187
Query: 184 VNLEYLSQTVWTKKEKMTVGKKTGTFEVAYPDSLVGTDSHTTMVNGLAVLGWGVGGIEAE 243
VNLEYL+QTVWT +++ EVAYPD+LVGTDSHTTMVNGLAVLGWGVGGIEAE
Sbjct: 188 VNLEYLAQTVWTDRDQ-------DGMEVAYPDTLVGTDSHTTMVNGLAVLGWGVGGIEAE 240
Query: 244 ACMLGQPLSMLLPNVVGFKLKGAMKEGVTATDLVLTVTQMLRKLGVVGKFVEFFGPGLDH 303
A MLGQP+SML+P VVGFKL G M EG TATDLVL V QMLRK GVVGKFVEF+G GLDH
Sbjct: 241 AAMLGQPVSMLIPEVVGFKLTGQMIEGTTATDLVLKVVQMLRKKGVVGKFVEFYGEGLDH 300
Query: 304 LSVADKATIANMAPEYGATCGFFPVDAAAIDYLKTSGRAAPRVALVQAYAKAQGLFRTAK 363
L +AD+ATIANMAPEYGATCGFFP+D + YL+ +GR R+ALV+AYAKA GL+R A
Sbjct: 301 LPLADRATIANMAPEYGATCGFFPIDNETLRYLRQTGRDEARIALVEAYAKANGLWRDA- 359
Query: 364 SADPVFTETLTLDLADVVPSMAGPKRPEGRIALPSVAEGFSVALANEYKKTEEPAKRFAV 423
S +P++T+TL LD+ ++VP+++GPKRP+ + L F+ + +K+ K V
Sbjct: 360 SYEPIYTDTLHLDMGEIVPAISGPKRPQDYLPLTDAKASFAREMETSFKR--PVGKEVPV 417
Query: 424 EGKKYEIGHGDVVIAAITSCTNTSNPSVLIGAGLLARNAAAKGLKAKPWVKTSLAPGSQV 483
G+ Y + G VVIA+ITSCTNTSNP VLIGAGL+AR A A GL KPWVKTSLAPGSQV
Sbjct: 418 AGEDYTMSSGKVVIASITSCTNTSNPYVLIGAGLVARKARALGLNRKPWVKTSLAPGSQV 477
Query: 484 VAAYLADSGLQAHLDKVGFNLVGFGCTTCIGNSGPLPEEISKSINDNGIVAAAVLSGNRN 543
V+ YL +GLQ LD VGFNLVG+GCTTCIGNSGPL EIS +IN+ +VAAAVLSGNRN
Sbjct: 478 VSEYLEAAGLQEDLDAVGFNLVGYGCTTCIGNSGPLQPEISAAINEGDLVAAAVLSGNRN 537
Query: 544 FEGRVSPDVQANYLASPPLVVAHALAGSVTKNLAVEPLGEGKDGKPVYLKDIWPTSKEIN 603
FEGR+SPDV+ANYLASPPLVVA+ALAG + +L EPLG G +G PVYLKDIWPT+ EI
Sbjct: 538 FEGRISPDVRANYLASPPLVVAYALAGDMNIDLTSEPLGMGTNG-PVYLKDIWPTNAEIA 596
Query: 604 AFMKKFVTASIFKKKYADVFKGDTNWRKIKTVESETYRWNMSSTYVQNPPYFEGMKKEPE 663
++K VT F+KKYADVFKGD W+ + T +S+TY W SSTY+QNPPYF+ M KEP
Sbjct: 597 ELVEKTVTREAFQKKYADVFKGDAKWQAVSTTDSQTYDWPASSTYIQNPPYFQNMSKEPG 656
Query: 664 PVTDIVEARILAMFGDKITTDHISPAGSIKLTSPAGKYLSEHQVRPADFNQYGTRRGNHE 723
+TDI ARILA+ GD ITTDHISPAGS K ++PAGKYL E QV P +FN YG+RRGNHE
Sbjct: 657 VITDITGARILALLGDMITTDHISPAGSFKESTPAGKYLVERQVSPREFNSYGSRRGNHE 716
Query: 724 VMMRGTFANIRIKNFMLKGADGNIPEGGLTKHWPDGEQMSIYDAAMKYQQEQVPLVVFAG 783
VMMRGTFANIRIKN ML G +G G PDG+Q SI+DA+M YQ +PLV+F G
Sbjct: 717 VMMRGTFANIRIKNEMLDGVEGGYTLG------PDGQQTSIFDASMAYQAAGIPLVLFGG 770
Query: 784 AEYGNGSSRDWAAKGTRLLGVRAVICQSFERIHRSNLVGMGVLPLTFEEGTSWSSLGLKG 843
EYG GSSRDWAAKGT LLGV+AVI +SFERIHRSNLVGMGV+P F EG + SLGLKG
Sbjct: 771 IEYGAGSSRDWAAKGTALLGVKAVIAESFERIHRSNLVGMGVIPFEFTEGQNRKSLGLKG 830
Query: 844 DEKVTLRGLVGDLKPRQKLTAEIVSGDGSLQRVSLLCRIDTLDELDYYRNGGILHYVLRK 903
DE V+++GL GDLKP + I GDG+++ + L CRIDT E++Y +GG+LHYVLR
Sbjct: 831 DETVSIQGLSGDLKPLSLVPCTITYGDGTVKTIQLKCRIDTEIEIEYVEHGGVLHYVLRD 890
Query: 904 LAA 906
LA+
Sbjct: 891 LAS 893
Lambda K H
0.317 0.134 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2140
Number of extensions: 90
Number of successful extensions: 7
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 906
Length of database: 894
Length adjustment: 43
Effective length of query: 863
Effective length of database: 851
Effective search space: 734413
Effective search space used: 734413
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Align candidate WP_011840366.1 RSPH17029_RS02300 (aconitate hydratase AcnA)
to HMM TIGR01341 (acnA: aconitate hydratase 1 (EC 4.2.1.3))
../bin/blast/fastacmd -i /tmp/list.25130.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.25130.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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