Align threonine synthase (EC 4.2.3.1) (characterized)
to candidate WP_011840384.1 RSPH17029_RS02435 threonine synthase
Query= BRENDA::Q8YFS0 (463 letters) >NCBI__GCF_000015985.1:WP_011840384.1 Length = 461 Score = 545 bits (1403), Expect = e-159 Identities = 276/461 (59%), Positives = 342/461 (74%), Gaps = 2/461 (0%) Query: 1 MKYVSTRGEAPVLGFSDALLAGLARDGGLYLPQEYPQFTAEQIRALRGKSYVEVALAVLT 60 M+Y+STRG APVLGF +A+L GLARDGGLY+P+ P + +I AL G SY EVA ++ Sbjct: 1 MQYISTRGTAPVLGFGEAMLTGLARDGGLYVPETVPALSESEIAALAGLSYEEVAFRIMR 60 Query: 61 PFTGGEIPAADFERMVREAYGTFRHDAVCPLVQTDANEFVLELFHGPTLAFKDVAMQLLA 120 PF G +F ++ AY F H A PLVQ N F+LELFHGPTLAFKD AMQL+ Sbjct: 61 PFVGETFGDDEFRGLIAAAYEGFGHAARAPLVQLGPNHFLLELFHGPTLAFKDFAMQLIG 120 Query: 121 RMMDYVLAQRGERATIVGATSGDTGGAAIEAFGGRDNTDIFILFPNGRVSPVQQRQMTSS 180 ++ LA+ G+R TIVGATSGDTG AAIEAF G N D+FILFP+GRVS VQ+RQMT+ Sbjct: 121 QLFQAALAKNGQRITIVGATSGDTGSAAIEAFRGLSNVDVFILFPHGRVSEVQRRQMTTP 180 Query: 181 GFSNVHALSIEGNFDDCQNLVKGMFNDLEFCDALSLSGVNSINWARIMPQVVYYFTAALS 240 +NVHAL+++G+FDDCQ +K MFND F DA+ L+GVNSINWAR++ QVVYYFT+A++ Sbjct: 181 SEANVHALAVDGDFDDCQARLKDMFNDFAFRDAVGLAGVNSINWARVLAQVVYYFTSAVA 240 Query: 241 LGAPDRAVSFTVPTGNFGDIFAGYVAKRMGLPIEQLIIATNDNDILSRTLESGAYEMRGV 300 LGAP R VSFTVPTGNFGDIFAGY+A+RMGLPI +L++ATN NDIL R L +GAYE GV Sbjct: 241 LGAPHREVSFTVPTGNFGDIFAGYIARRMGLPIARLVVATNQNDILHRALSTGAYETEGV 300 Query: 301 AQTTSPSMDIQISSNFERLLFEAHGRDAAAVRGLMQGLKQSGGFTISEKPLSAIRSEFSA 360 + SPSMDIQ+SSNFER LF+A+GRD AAV LM LKQ GGF ISE L +R+ F++ Sbjct: 301 TPSISPSMDIQVSSNFERALFDAYGRDGAAVAALMAELKQ-GGFRISENALGTLRATFAS 359 Query: 361 GRSTVDETAATIESVLSKDGYLLDPHSAIGVKVAREKASGTAPMVVLATAHPAKFPDAVK 420 GR++ +ET ATI + + G LL PHSA+GVKVA E+A G PM+ LATAHPAKFPDAV+ Sbjct: 360 GRASEEETLATIRATHAATGELLCPHSAVGVKVA-EEALGPEPMITLATAHPAKFPDAVE 418 Query: 421 AACGVEPQLPAWLCDLMQRKESFTVLHNELKIVEEYVRHHS 461 AA G+ P LPA + DL R E T + N+L +E +R + Sbjct: 419 AATGLRPPLPARMADLFDRPERVTRVPNDLSALETLIRERT 459 Lambda K H 0.320 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 598 Number of extensions: 23 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 463 Length of database: 461 Length adjustment: 33 Effective length of query: 430 Effective length of database: 428 Effective search space: 184040 Effective search space used: 184040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.3 bits)
Align candidate WP_011840384.1 RSPH17029_RS02435 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))
../bin/blast/fastacmd -i /tmp/list.2120.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.2120.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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