Alignments for a candidate for trpD_2 in Cereibacter sphaeroides ATCC 17029

Align Anthranilate phosphoribosyltransferase; EC 2.4.2.18 (characterized)
to candidate WP_011840557.1 RSPH17029_RS03630 anthranilate phosphoribosyltransferase

Query= SwissProt::Q8PD71
         (345 letters)



>NCBI__GCF_000015985.1:WP_011840557.1
          Length = 338

 Score =  266 bits (681), Expect = 4e-76
 Identities = 148/330 (44%), Positives = 193/330 (58%), Gaps = 2/330 (0%)

Query: 12  TIEHREIFHDEMVDLMRQIMRGEVSDAMVSAILTGLRVKKETIGEIAGAATVMREFSRRV 71
           T   R +  +E       +  GE + A +  +L  LR + ET+ E A AA+VMR    +V
Sbjct: 11  TAATRPLSREEAEFAFECLFEGEATPAQMGGLLMALRTRGETVDEYAAAASVMRAKCHKV 70

Query: 72  EVTDRRHMVDIVGTGGDGSHTFNISTCAMFVAAAGGAKVAKHGNRSVSSKSGSADALEAL 131
              +    +DIVGTGGDG  T NIST   FV A  G  VAKHGNR++SSKSG+ADAL  +
Sbjct: 71  RAPNGA--IDIVGTGGDGKGTLNISTATAFVVAGAGVPVAKHGNRNLSSKSGAADALTEM 128

Query: 132 GAVIELQPEQVAASLAQTGIGFMYAPVHHPAMKVVAPVRREMGVRTIFNILGPLTNPAGS 191
           G  + + PEQV A L + GIGFM AP+HHPAM+ V PVR E+G RTIFNILGPLTNPAG 
Sbjct: 129 GLNVMIGPEQVEACLMEAGIGFMMAPMHHPAMRHVGPVRAELGTRTIFNILGPLTNPAGV 188

Query: 192 PNILMGVFHPDLVGIQARVLQELGAERALVVWGRDGMDELSLGAGTLVGELRDGQVHEYE 251
              L G F PDL+   A VL  LG+E+A +V G DG DEL++ A + V  L  GQ+ E+E
Sbjct: 189 KRQLTGAFSPDLIRPMAEVLSALGSEKAWLVHGGDGTDELAISAASKVAALEGGQIREFE 248

Query: 252 VHPEDFGIAMSASRNLKVADAAESRAMLLQVLDNVPGPALDIVALNAGAALYVAGVADSI 311
           +HPE+ G+ +     +     AE+      +LD  PG   D V LNA AAL VA  A  +
Sbjct: 249 LHPEEAGLPVHPFEEIVGGTPAENAQAFRALLDGAPGAYRDAVLLNAAAALVVADRAAHL 308

Query: 312 ADGIVRARQVLADGSARACLDAYVAFTQQA 341
            +G+  A   +  G+A+A +      T  A
Sbjct: 309 REGVEIATDSILSGAAKAKVALLARLTNAA 338


Lambda     K      H
   0.320    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 355
Number of extensions: 13
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 338
Length adjustment: 29
Effective length of query: 316
Effective length of database: 309
Effective search space:    97644
Effective search space used:    97644
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_011840557.1 RSPH17029_RS03630 (anthranilate phosphoribosyltransferase)
to HMM TIGR01245 (trpD: anthranilate phosphoribosyltransferase (EC 2.4.2.18))

Software error:

../bin/blast/fastacmd -i /tmp/list.22874.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.22874.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.