Alignments for a candidate for hisD in Cereibacter sphaeroides ATCC 17029

Align Histidinol dehydrogenase; HDH; EC 1.1.1.23 (uncharacterized)
to candidate WP_011840632.1 RSPH17029_RS04215 histidinol dehydrogenase

Query= curated2:O26327
         (426 letters)



>NCBI__GCF_000015985.1:WP_011840632.1
          Length = 441

 Score =  294 bits (752), Expect = 4e-84
 Identities = 176/423 (41%), Positives = 242/423 (57%), Gaps = 9/423 (2%)

Query: 5   ITEFDYRRISELVERARLDVDDVLGPVADIISMVRDGGDDAL----RELTGRFDGVTVEN 60
           + E D    + L+ R+  D+   L  V  I+  VR  GD AL    REL  R  G+T E 
Sbjct: 9   LAELDAAGRAALLRRSETDLSMFLEKVGPILEAVRTEGDAALVRFGRELD-RAKGLTREG 67

Query: 61  FRVSREEIEEAHKNLEPGVKEALREAASNIEEFHRMQMPSG-WMSEVRPGVMAGQLVRPI 119
            +V+  E +EA   +EP + EA+R A  NI  FH  Q P   W+ E+RPG  AG    PI
Sbjct: 68  LKVTEAEFDEAFGLVEPEIVEAIRFAIGNIRTFHEEQAPEPMWLKELRPGAFAGDRFTPI 127

Query: 120 DSVGCYIPGGRAVYPSTILMTVIPARIAGVERIVCCTPPAQDGSVPDAVLVAADMAGASE 179
            SV  Y+P G+  +PS  +MT +PA +A V +I   TPPA DG V  A LVAA +AG   
Sbjct: 128 RSVALYVPRGKGSFPSVTMMTSVPAVVAKVPQIAIFTPPAPDGKVDAATLVAARLAGVET 187

Query: 180 IYRVGGAQAVAAMAYGTETIRPVDKIVGPGNIFVTAAKKLVYGEVDIDFPAGPSEVLIIA 239
           +Y+VGGAQAVAA AYGT+T+ P  KIVGPG+ +V AAK+L+ G +D   PAGPSE +I+A
Sbjct: 188 VYKVGGAQAVAAAAYGTDTVTPALKIVGPGSPWVVAAKRLLAGVIDPGLPAGPSESIILA 247

Query: 240 DETASPEYIALEILAQAEHDPQAASVLVTDSRDLALEVKEMVHENIKYM--ERANIIRES 297
           DET      AL++L +AEH P +++ LVT SR +A E    +  +   M  +R +  +  
Sbjct: 248 DETVHGGLAALDLLIEAEHGPDSSAWLVTHSRQVAEEALAALPSHWAAMTPQRVDFSQAV 307

Query: 298 L-ERYGMIVLTADIDEAVDFSNAYAPEHLVIMTDSPEETLEGIRNAGSIFLGELSPVAAG 356
           L  R G IVLT   +E+  F N YAPEHL I+++ P E L  I  A  + +G  +P+   
Sbjct: 308 LCGRAGGIVLTGSAEESHAFVNDYAPEHLQILSEKPFEHLGRITEAAEVLMGPHTPITIA 367

Query: 357 DYGSGTNHVLPTSGCARMYSGLSTESFIKKPTVQRITKEGLRNLQGTVLKLAEYEGLHAH 416
           ++  G N VLPTS  AR +  LS   F+++ +V  +T      L     +LAEYEG  +H
Sbjct: 368 NFCLGPNAVLPTSRGARTWGPLSVHDFLRRSSVGYVTAPAYPELAEVAKRLAEYEGFSSH 427

Query: 417 AES 419
             +
Sbjct: 428 GNA 430


Lambda     K      H
   0.317    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 459
Number of extensions: 28
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 441
Length adjustment: 32
Effective length of query: 394
Effective length of database: 409
Effective search space:   161146
Effective search space used:   161146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_011840632.1 RSPH17029_RS04215 (histidinol dehydrogenase)
to HMM TIGR00069 (hisD: histidinol dehydrogenase (EC 1.1.1.23))

Software error:

../bin/blast/fastacmd -i /tmp/list.16818.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.16818.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.