Alignments for a candidate for gcvT in Cereibacter sphaeroides ATCC 17029

Align Aminomethyltransferase (EC 2.1.2.10) (characterized)
to candidate WP_011840654.1 RSPH17029_RS04420 glycine cleavage system aminomethyltransferase GcvT

Query= reanno::pseudo13_GW456_L13:PfGW456L13_1866
         (374 letters)



>NCBI__GCF_000015985.1:WP_011840654.1
          Length = 377

 Score =  399 bits (1024), Expect = e-116
 Identities = 213/375 (56%), Positives = 255/375 (68%), Gaps = 6/375 (1%)

Query: 3   TEQLLKTPLHALHIELGARMVPFAGYDMPVQYPLGVMKEHQHTRDQAGLFDVSHMGQIRL 62
           T  L + PLH LH+ LG R+VPFAG++MPVQYP GVMKEH HTR  AGLFDVSHMGQ+ L
Sbjct: 5   TPGLRRLPLHDLHVRLGGRLVPFAGWEMPVQYPAGVMKEHLHTRTAAGLFDVSHMGQLLL 64

Query: 63  T--GANAA--KALETLVPVDIIDLPVGMQRYAMFTNATGGILDDLMVANLGNDELFLVVN 118
              G  AA   A E L+PVD++ L  G QRY + TN TGGI DDLM AN G D L++VVN
Sbjct: 65  RPRGGMAALGAAFERLMPVDVLGLAEGRQRYGILTNETGGIRDDLMFANRG-DHLYVVVN 123

Query: 119 AACKDQDLAHLRKHIGDQCTIEPLFEERALLALQGPAAVTVLARLAPEVAKMTFMQFARV 178
           AAC  +D AHLR  +GD   +  + ++R LLALQGPAA  VLA L P  A M FM     
Sbjct: 124 AACVAEDTAHLRAALGDAAEVVTV-DDRGLLALQGPAAEAVLASLVPAAAAMRFMDVIAA 182

Query: 179 KLLGVDCFVSRSGYTGEDGFEISVPATNAEALARALLAEAEVAAIGLGARDSLRLEAGLC 238
              G + ++SRSGYTGEDGFEISVP     A A ALLA  EVA IGLGARDSLRLEAGLC
Sbjct: 183 DWQGAELWISRSGYTGEDGFEISVPVEAITAFAEALLAREEVAPIGLGARDSLRLEAGLC 242

Query: 239 LYGHDMNTDTTPIEASLLWAISKPRRADGARAGGFPGAETVFAQQQAGVSRKRVGLLPQE 298
           LYGHD++T T+P+EA L WAI K RR  GARAGGF G + + A  +AG  R RVGL P  
Sbjct: 243 LYGHDIDTTTSPVEAGLAWAIQKARRPGGARAGGFAGDQRILADLEAGPERLRVGLSPSG 302

Query: 299 RTPVREGAEIVNEAGDIIGSVCSGGFGPTLGGPLAMGYVDSAYIALDTPVWAIVRGKKVP 358
           R P+REG E+    G  +G V SGGFGP++  P+AMGYV +++ A  T +   VRGK++P
Sbjct: 303 RAPMREGTELFTPDGTPVGRVTSGGFGPSVEAPIAMGYVATSHAAPGTALVGEVRGKRLP 362

Query: 359 LLVSKMPFVPQRYYR 373
           + V  +PF P  Y R
Sbjct: 363 VTVVDLPFRPSTYKR 377


Lambda     K      H
   0.321    0.138    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 497
Number of extensions: 22
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 377
Length adjustment: 30
Effective length of query: 344
Effective length of database: 347
Effective search space:   119368
Effective search space used:   119368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)

Align candidate WP_011840654.1 RSPH17029_RS04420 (glycine cleavage system aminomethyltransferase GcvT)
to HMM TIGR00528 (gcvT: glycine cleavage system T protein (EC 2.1.2.10))

Software error:

../bin/blast/fastacmd -i /tmp/list.19599.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.19599.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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