Align Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (characterized)
to candidate WP_011840655.1 RSPH17029_RS04430 aminomethyl-transferring glycine dehydrogenase
Query= reanno::pseudo13_GW456_L13:PfGW456L13_1868
(950 letters)
>NCBI__GCF_000015985.1:WP_011840655.1
Length = 956
Score = 1120 bits (2896), Expect = 0.0
Identities = 568/946 (60%), Positives = 691/946 (73%), Gaps = 20/946 (2%)
Query: 15 RHIGPRAGDEQAMLNSLGFDSLEALSASVIPDSIKGTSVLGLEDGLSEADALALIKSIAT 74
RHIGP + + ML +G SL+ L +P SI+ + L L+E + LA ++ +A
Sbjct: 17 RHIGPSPSEMEEMLRVVGVSSLDQLIEETVPASIRQETPLDWAP-LAEHELLARMREVAG 75
Query: 75 KNQLFKTFIGQGYYGTHTPSPILRNLLENPAWYTAYTPYQPEISQGRLEALLNFQTLISD 134
KN++ + IGQGYYGT TP I RN+LENPAWYTAYTPYQPEI+QGRLEALLN+QT+++D
Sbjct: 76 KNRVMTSLIGQGYYGTVTPPAIQRNILENPAWYTAYTPYQPEIAQGRLEALLNYQTMVAD 135
Query: 135 LTGLPIANASLLDEATAAAEAMTFCKRLSKNKGSHAFFASVHCHPQTLDVLRTRAEPLGI 194
LTGLP+ANASLLDEATAAAEAMT +R SK+K + AFF CHPQT+ V+RTRAEPLGI
Sbjct: 136 LTGLPVANASLLDEATAAAEAMTMAERASKSK-ARAFFVDADCHPQTISVIRTRAEPLGI 194
Query: 195 DVVVGDERELTDVTPFFGALLQYPASNGDVFDYRELTERFHAANALVAVAADLLALTVLT 254
+V+VG +L FGAL QYP + G V D+ H A AL VA DLLAL +L
Sbjct: 195 EVIVGHPAQLVP-EDVFGALFQYPGTYGLVRDFTRDIAALHEAKALAVVATDLLALCLLK 253
Query: 255 APGEFGADVAIGSAQRFGVPLGFGGPHAAYFSTKDAFKRDMPGRLVGVSVDRFGNPALRL 314
PG GAD+AIGS+QRFGVP+G+GGPHAA+ S KD KR MPGRLVGVSVD GN A RL
Sbjct: 254 EPGAMGADIAIGSSQRFGVPMGYGGPHAAFMSCKDDLKRSMPGRLVGVSVDARGNKAYRL 313
Query: 315 AMQTREQHIRREKATSNICTAQVLLANIASMYAVYHGPKGLTQIANRVHHLTAILAKGLS 374
A+QTREQHIRREKATSN+CTAQ LLA +AS YAV+HGP+GL IA RVH T LA L
Sbjct: 314 ALQTREQHIRREKATSNVCTAQALLAVMASFYAVFHGPRGLRAIAERVHLNTVRLATALK 373
Query: 375 ALGLSVEQASFFDTLTVKAGAQTAALHDKAHAQRINLRVVDGERLGLSLDETTTQADVET 434
G V +FFDT+TV+ G A + A + INLR V +R+G+SLDETT +
Sbjct: 374 EAGARVSPEAFFDTITVEVGVGQAGILAAARHRGINLRKVGRDRVGISLDETTDAGVIAR 433
Query: 435 LWSLLSDGKALPDFAALAASVQSAIPATLVRQSPILSHPVFNRYHSETELMRYLRKLADK 494
+ + P A V P L+R++ LSHPVF +E+E+MRY+R+L+D+
Sbjct: 434 VLDAFGIHEPAP------AKVGLGFPEPLLRETGYLSHPVFQMNRAESEMMRYMRRLSDR 487
Query: 495 DLALDRTMIPLGSCTMKLNAASEMIPVTWAEFGALHPFAPAEQSAGYQQLTDELEAMLCA 554
DLALDR MIPLGSCTMKLNAA+EM+P+TW EFG LHPFAPA+Q+AGY + +L LC
Sbjct: 488 DLALDRAMIPLGSCTMKLNAAAEMMPITWPEFGTLHPFAPADQAAGYHEAIGDLAQRLCR 547
Query: 555 ATGYDSVSLQPNAGSQGEYAGLLAIRAYHQSRGEDRRDICLIPSSAHGTNPATAQMAGMR 614
TGYD++S+QPN+G+QGEYAGLL I AYH++RGE R ICLIP SAHGTNPA+AQMAGM+
Sbjct: 548 ITGYDAMSMQPNSGAQGEYAGLLTILAYHRARGEAERTICLIPVSAHGTNPASAQMAGMK 607
Query: 615 VVVTACDARGNVDIEDLRAKAIEHREHLAALMITYPSTHGVFEEGIREICGIIHDNGGQV 674
VVV G+VD+ED R KA + LAA MITYPSTHGVFEE +RE+C I H++GGQV
Sbjct: 608 VVVVKSAPNGDVDLEDFRDKAAAAGDRLAACMITYPSTHGVFEETVREVCRITHEHGGQV 667
Query: 675 YIDGANMNAMVGLCAPGKFGGDVSHLNLHKTFCIPHGGGGPGVGPIGVKSHLAPFLPGHA 734
YIDGANMNAMVGL PG GGDVSHLNLHKTF IPHGGGGPG+GPIGVK+HLAP+LPGH
Sbjct: 668 YIDGANMNAMVGLVQPGAIGGDVSHLNLHKTFAIPHGGGGPGMGPIGVKAHLAPYLPGHP 727
Query: 735 QM----------ERKEGAVCAAPFGSASILPITWMYIRMMGGAGLKRASQLAILNANYIS 784
++ EG V AAP+GSASIL I+W Y MMGG GL +A+++AILNANYI+
Sbjct: 728 EVTGPLTGGHDEAADEGPVSAAPYGSASILLISWAYCLMMGGEGLTQATRVAILNANYIA 787
Query: 785 RRLEEHYPVLYTGSNGLVAHECILDLRPLKDSSGISVDDVAKRLIDFGFHAPTMSFPVAG 844
RL Y VL+ G+ G VAHECILD RP + +G++VDD+AKRLID GFHAPTMS+PV G
Sbjct: 788 ARLRGAYKVLFMGNRGRVAHECILDTRPFAE-AGVTVDDIAKRLIDNGFHAPTMSWPVPG 846
Query: 845 TLMIEPTESESKEELDRFCDAMIRIREEIRAVENGTLDKDDNPLKNAPHTAKELVGEWSH 904
TLM+EPTESE+K E+DRF A++ IREEIRAVE G + D+PL++APHT ++LV +W
Sbjct: 847 TLMVEPTESETKAEIDRFVAALLAIREEIRAVEEGEIAAGDSPLRHAPHTVEDLVADWDR 906
Query: 905 PYSREQAVYPVASLIEGKYWPPVGRVDNVFGDRNLVCACPSIESYA 950
Y REQ +P S KYWPPVGRVDN +GDRNLVC CP +ESY+
Sbjct: 907 KYPREQGCFPPGSFRVDKYWPPVGRVDNAWGDRNLVCTCPPVESYS 952
Lambda K H
0.319 0.135 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2288
Number of extensions: 88
Number of successful extensions: 8
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 950
Length of database: 956
Length adjustment: 44
Effective length of query: 906
Effective length of database: 912
Effective search space: 826272
Effective search space used: 826272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Align candidate WP_011840655.1 RSPH17029_RS04430 (aminomethyl-transferring glycine dehydrogenase)
to HMM TIGR00461 (gcvP: glycine dehydrogenase (EC 1.4.4.2))
../bin/blast/fastacmd -i /tmp/list.20760.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.20760.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.