Alignments for a candidate for fadA in Cereibacter sphaeroides ATCC 17029

Align subunit of β-ketoadipyl CoA thiolase (EC 2.3.1.174; EC 2.3.1.16) (characterized)
to candidate WP_011840657.1 RSPH17029_RS04440 acetyl-CoA C-acetyltransferase

Query= metacyc::MONOMER-3207
         (400 letters)



>NCBI__GCF_000015985.1:WP_011840657.1
          Length = 403

 Score =  267 bits (682), Expect = 5e-76
 Identities = 177/424 (41%), Positives = 242/424 (57%), Gaps = 45/424 (10%)

Query: 1   MRDVFICDAIRTPIG--RFGGALAGVRADDLAAVPLKALIEPNPAVQWDQVDEVFFGCAN 58
           M + +I DA+RTP G  R  GAL  V +  L+A  L A+ E N  +    V++V +G A 
Sbjct: 1   MTEAYIYDALRTPRGKGRPDGALHEVTSVALSAKVLNAVKERNH-LDGAAVEDVIWGNAT 59

Query: 59  QAGEDNRNVARMALLLAGLPESIPGVTLNRLCASGMDAIGTAFRAIASGEMELAIAGGVE 118
           Q GE    +AR A+LL+ L ESIPG+++NR CASGM+A+  A   + +G  E  IAGGVE
Sbjct: 60  QVGEQGGCLARSAVLLSDLDESIPGLSINRFCASGMEAVNLAANQVRAGAGEAYIAGGVE 119

Query: 119 SMSRAPFVMGKAESGYSRNMKLEDTTIGWRFINPLMKSQYGVDSMPETADNVADDYQVSR 178
            MSR    MG   +  + +  L             MK+ +    +  +AD +A  Y  SR
Sbjct: 120 MMSRV--AMGSDGAAVAADPSLA------------MKTYFVPQGI--SADIIATRYGFSR 163

Query: 179 ADQDAFALRSQQKAAAAQAAGFFAEEIVPVRIAHKKGETIVERDEHLRPETTLEALTKLK 238
            + DA A+ SQ++AAAA A G FA  +VPVR   + G TI+ERDE+LRP T +++L  LK
Sbjct: 164 DEADALAVESQKRAAAAWAEGRFARSVVPVR--DQNGVTILERDEYLRPGTDMQSLGALK 221

Query: 239 P--------VNGPDKTVT--------------AGNASGVNDGAAALILASAEAVKKHGLT 276
           P        + G DK                 AGN+SG+ DGAAA+++ S    + HGL 
Sbjct: 222 PAFKEMGEQMPGFDKLALMKYPELERVEHIHHAGNSSGIVDGAAAVLIGSRAFGEAHGLR 281

Query: 277 PRARVLGMASGGVAPRVMGIGPVPAVRKLTERLGVAVSDFDVIELNEAFASQGLAVLREL 336
           PRAR+   A  G  P +M  GPVP  +K+    G+ +SD D+ E+NEAFA+  L   +  
Sbjct: 282 PRARIRATAKIGTDPTIMLTGPVPVTQKILREAGMQISDIDLFEVNEAFAAVVLRFQQAF 341

Query: 337 GVADDAPQVNPNGGAIALGHPLGMSGARLVLTALHQLEKSGGRKGLATMCVGVGQGLALA 396
           GV  D  +VNPNGGAIA+GHPLG +GA ++ T L +LE++    GLAT+CV  G G A  
Sbjct: 342 GV--DPARVNPNGGAIAMGHPLGATGAIIIGTLLDELERTDRSVGLATLCVASGMGAATI 399

Query: 397 IERV 400
           IERV
Sbjct: 400 IERV 403


Lambda     K      H
   0.318    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 408
Number of extensions: 15
Number of successful extensions: 6
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 403
Length adjustment: 31
Effective length of query: 369
Effective length of database: 372
Effective search space:   137268
Effective search space used:   137268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_011840657.1 RSPH17029_RS04440 (acetyl-CoA C-acetyltransferase)
to HMM TIGR01930 (acetyl-CoA C-acyltransferase (EC 2.3.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.10027.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.10027.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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