Alignments for a candidate for rocF in Cereibacter sphaeroides ATCC 17029

Align arginase subunit (EC 3.5.3.1) (characterized)
to candidate WP_011840922.1 RSPH17029_RS06535 arginase

Query= metacyc::MONOMER-11552
         (324 letters)



>NCBI__GCF_000015985.1:WP_011840922.1
          Length = 308

 Score =  361 bits (927), Expect = e-104
 Identities = 176/306 (57%), Positives = 221/306 (72%), Gaps = 1/306 (0%)

Query: 19  KTCQILGAPVQSGASQPGCLMGPDAFRTAGLTQVLTELGWAVTDLGDATPTVEPELSHPN 78
           KTC ++GAP+ SG  +PGCLMGP A+R AGL + L +LG AV D GD      PE++ P 
Sbjct: 3   KTCILIGAPIDSGQRRPGCLMGPAAYRVAGLGRALADLGHAVEDRGDVALGPLPEVAPPE 62

Query: 79  SAVKNLDALVGWTRSLSQKALEMARSCDLPVFLGGDHSMSAGTVSGVAQRTAELGKEQFV 138
             V +L   +GWT +L + A+E A     P+ +GGDHS++ GTV+G A   A +G+  F+
Sbjct: 63  GPVHDLPETIGWTAAL-KTAVEEALGDGFPIVMGGDHSLALGTVAGAAAHAAAVGRPLFL 121

Query: 139 LWLDAHTDLHTLHTTASGNLHGTPVAYYTGQSGFEGLPPLAAPVNPRNVSMMGIRSVDPE 198
           LWLDAH+D HTL TT SGNLHG PVAY  G+ GF+G PP  AP+ P  + + GIRSVDPE
Sbjct: 122 LWLDAHSDFHTLQTTTSGNLHGVPVAYAAGRDGFDGFPPFPAPLPPERICLFGIRSVDPE 181

Query: 199 ERRRVAEIGVQVADMRVLDEQGVVRPLEAFLDRVSKVSGRLHVSLDVDFLDPAIAPAVGT 258
           E   +    V + DMRV+DE G+  P+  FL+ V   +G LHVSLDVDF+DPA APAVGT
Sbjct: 182 EHAALLLHDVSIIDMRVIDEFGICAPMREFLETVRAANGMLHVSLDVDFVDPAHAPAVGT 241

Query: 259 TVPGGATFREAHLIMEMLHDSGLVTSLDLAELNPFLDERGRTARLITDLASSLFGRRVFD 318
           TVPGGAT REAHL+ME+LH+SGLVTSLDL ELNPFLDERGRTARL+ +LA+S+ GR+VFD
Sbjct: 242 TVPGGATVREAHLVMELLHESGLVTSLDLVELNPFLDERGRTARLMVELAASIMGRKVFD 301

Query: 319 RVTTAF 324
           R T +F
Sbjct: 302 RPTRSF 307


Lambda     K      H
   0.318    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 337
Number of extensions: 13
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 308
Length adjustment: 27
Effective length of query: 297
Effective length of database: 281
Effective search space:    83457
Effective search space used:    83457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate WP_011840922.1 RSPH17029_RS06535 (arginase)
to HMM TIGR01229 (rocF: arginase (EC 3.5.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.10610.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.10610.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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