Alignments for a candidate for glpK in Cereibacter sphaeroides ATCC 17029

Align Glycerol kinase (EC 2.7.1.30) (characterized)
to candidate WP_011840942.1 RSPH17029_RS06690 glycerol kinase GlpK

Query= reanno::Dino:3610039
         (519 letters)



>NCBI__GCF_000015985.1:WP_011840942.1
          Length = 493

 Score =  686 bits (1771), Expect = 0.0
 Identities = 342/493 (69%), Positives = 391/493 (79%), Gaps = 3/493 (0%)

Query: 24  VRHVLAIDQGTTSSRAIVFDADMNIVSIAQEEFAQHYPDSGWVEHDPEDLWDTVLRTCRN 83
           + H+LAIDQGTTSSRA+VFD  + + S+AQEEF Q YP  GWVEHDP DLW +V  T R 
Sbjct: 1   MNHILAIDQGTTSSRAMVFDEALTLKSVAQEEFPQIYPRPGWVEHDPSDLWSSVAATARA 60

Query: 84  VLERTGLAATDLAGIGITNQRETTVVWDKSTGKPIHNAIVWQDRRTAPFCAELRKAGHDA 143
            +ER  +  + LA IGITNQRET VVW++++G PIHNAIVWQDRRTA  C  L +AGH+ 
Sbjct: 61  AVERAEIDGS-LAAIGITNQRETVVVWERASGHPIHNAIVWQDRRTADLCHALAEAGHEP 119

Query: 144 LITAQTGLLADPYFSGTKLKYILDTVEGARDRAKAGELLFGTVDSFLIWRLTNGAAHVTD 203
           LIT +TGLL DPYFS TKLK++LD VEGAR RA+ GELLFGTVDS+LIW+LT G AHVTD
Sbjct: 120 LITGRTGLLLDPYFSATKLKWLLDHVEGARARARRGELLFGTVDSYLIWKLTGGRAHVTD 179

Query: 204 ATNAARTMLYDIHKGAWSAEICTLFDIPLGMLPQVHDCDAEFGTCTPEHLGGAVPILGVA 263
           ATNAARTML+DI +G W  EIC L DIP+ MLP+V DC A FG    +  G  +PILGVA
Sbjct: 180 ATNAARTMLFDIGRGIWDPEICGLLDIPMEMLPEVKDCAAPFGMTRADLFGREIPILGVA 239

Query: 264 GDQQAATIGQACFEPGMLKSTYGTGCFALLNTGEAPVTSTNRLLTTIAYQLDGKPTYALE 323
           GDQQAAT GQACF PGM+KSTYGTGCFALLNTGE  VTS  RLLTTIAYQL GK TYALE
Sbjct: 240 GDQQAATCGQACFRPGMMKSTYGTGCFALLNTGEERVTSRARLLTTIAYQLGGKRTYALE 299

Query: 324 GSIFVAGAVVQWLRDGLKLIANASETQPLAEAADPHDPVILVPAFTGLGAPYWNAECRGA 383
           GSIF+AGAVVQWLRDGLK+I  A ETQ LA ++D    +++VPAFTGLGAP+W  E RGA
Sbjct: 300 GSIFIAGAVVQWLRDGLKIIREAGETQGLALSSDAAQDLVIVPAFTGLGAPWWKPESRGA 359

Query: 384 VFGLSRGSGPEEFARAALESVGYQTRDLLEAMHKDWSDAREGQPTLRVDGGMTASDWTMQ 443
           VFGL+R SGP EFARAALESVGYQTRDLLEAM  DW+   EG   LRVDGGM ASDW+MQ
Sbjct: 360 VFGLTRNSGPAEFARAALESVGYQTRDLLEAMRADWAAGAEG--VLRVDGGMAASDWSMQ 417

Query: 444 FLADIIDAPVDRPKITETTALGVAWLAGQKAGLYPDRAGFAANWALDQRFEPKMDATTRD 503
           FLADII APVDRP + ETTALGVAWLAG +AGL P    FAA+WAL++RFEP+M+A+ R+
Sbjct: 418 FLADIIGAPVDRPVVRETTALGVAWLAGMQAGLCPGPEEFAADWALERRFEPQMEASVRE 477

Query: 504 TKYAAWKRAVAAV 516
            KY  W RAV AV
Sbjct: 478 AKYDRWGRAVRAV 490


Lambda     K      H
   0.319    0.134    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 887
Number of extensions: 33
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 493
Length adjustment: 34
Effective length of query: 485
Effective length of database: 459
Effective search space:   222615
Effective search space used:   222615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)

Align candidate WP_011840942.1 RSPH17029_RS06690 (glycerol kinase GlpK)
to HMM TIGR01311 (glpK: glycerol kinase (EC 2.7.1.30))

Software error:

../bin/blast/fastacmd -i /tmp/list.5941.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.5941.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.