Alignments for a candidate for cimA in Cereibacter sphaeroides ATCC 17029

Align (R)-citramalate synthase (EC 2.3.3.21) (characterized)
to candidate WP_011840981.1 RSPH17029_RS06990 citramalate synthase

Query= BRENDA::Q74C76
         (528 letters)



>NCBI__GCF_000015985.1:WP_011840981.1
          Length = 550

 Score =  419 bits (1078), Expect = e-121
 Identities = 242/542 (44%), Positives = 337/542 (62%), Gaps = 28/542 (5%)

Query: 6   LYDTTLRDGTQAEDISFLVEDKIRIAHKLDEIGIHYIEGGWPGSNPKDVAFFKDIKKEKL 65
           +YDTTLRDG Q + + F   +K +IA  LD +G+ YIEGGWPG+NP D  FF  +   + 
Sbjct: 17  IYDTTLRDGQQTQGVQFSTPEKRQIAEALDRLGVDYIEGGWPGANPTDSEFFAALPAVR- 75

Query: 66  SQAKIAAFGSTRRAKVTPDKDHNLKTLIQAEPDVCTIFGKTWDFHVHEALRISLEENLEL 125
             A++AAFG T+RA  + + D  L  ++ A  D   + GKT +FHV  AL ++LEENLE 
Sbjct: 76  --ARVAAFGMTKRAGRSAENDDVLAAVLDAGTDTVCLVGKTHEFHVTTALGVTLEENLEA 133

Query: 126 IFDSLEYLKANVPEVFYDAEHFFDGYKANPDYAIKTLKAAQDAKADCIVLCDTNGGTMPF 185
           I  S+ ++ A   E   DAEHFFDGY+ANP YA+  L+AA  A A  +VLCDTNGGT+P 
Sbjct: 134 IRASVAHVVARGREAILDAEHFFDGYRANPAYALGCLQAALGAGARWVVLCDTNGGTLPA 193

Query: 186 ELVEIIREVRKHITA-----PLGIHTHNDSECAVANSLHAVSEGIVQVQGTINGFGERCG 240
           E+  I+ EV   I A      LGIHTH+D+  AVA +L AV  G  QVQGT+NG GERCG
Sbjct: 194 EVGRIVAEV---IAAGVPGDRLGIHTHDDTGTAVAATLAAVDAGARQVQGTLNGLGERCG 250

Query: 241 NANLCSIIPALKLKMK-----RECIGDDQLRKLRDLSRFVYELANLSPNKHQAYVGNSAF 295
           NANL ++IP   LK          I  + L  +  +SR + ++ N  P +  AYVG SAF
Sbjct: 251 NANLTTLIPTFLLKEPYASRFETGIDREALSGMVRVSRMLDDILNRVPRRASAYVGASAF 310

Query: 296 AHKGGVHVSAIQRHPETYEHLRPELVGNMTRVLVSDLSGRSNILAKAEEFNIKMDSKDPV 355
           AHK G+H SAI + P TYEH+ P LVGN+  + +S+ +G+SN+ A+  E  +++ S DP 
Sbjct: 311 AHKAGLHASAILKDPATYEHVDPALVGNVRVIPMSNQAGQSNLRARLAEAGLEVPSGDPR 370

Query: 356 TLEILENIKEMENRGYQFEGAEASFELLMKRALGTHRKFFSVIGFRVIDEKRH--EDQKP 413
              ILE +K  E++GY ++ A+ASFEL+ +R LG    FF V  +RV  E+R   E    
Sbjct: 371 LGRILETVKAREDQGYAYDSAQASFELVARRELGLLPSFFEVKRYRVTVERRRVGEGTMT 430

Query: 414 LSEATIMVKVGGKIEHTAAEG-------NGPVNALDNALRKALEKFYPRLKEVKLLDYKV 466
           LSEA ++V + G+   + +E         GPVNAL  AL K L ++   + +++L+D+KV
Sbjct: 431 LSEAVVVVLIDGQRVLSVSESLDENGTERGPVNALSKALAKDLGRWQSVIDDMRLVDFKV 490

Query: 467 RVLPAGQGTASSIRVLIESGDKES-RWGTVGVSENIVDASYQALLDSVEYKLHKSEEIEG 525
           R+     GT ++ RV+I+S D +  RW TVGVS NIVDAS++ALLD++ +KL +    E 
Sbjct: 491 RITQG--GTEAATRVIIDSEDGQGRRWSTVGVSPNIVDASFEALLDAINWKLVRDARQED 548

Query: 526 SK 527
           S+
Sbjct: 549 SR 550


Lambda     K      H
   0.317    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 709
Number of extensions: 29
Number of successful extensions: 7
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 550
Length adjustment: 35
Effective length of query: 493
Effective length of database: 515
Effective search space:   253895
Effective search space used:   253895
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)

Align candidate WP_011840981.1 RSPH17029_RS06990 (citramalate synthase)
to HMM TIGR00977 (cimA: citramalate synthase (EC 2.3.1.182))

Software error:

../bin/blast/fastacmd -i /tmp/list.20001.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.20001.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.